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https://github.com/mpastell/Pweave

Pweave is a scientific report generator and a literate programming tool for Python. It can capture the results and plots from data analysis and works well with numpy, scipy and matplotlib.
https://github.com/mpastell/Pweave

jupyter python python3 reproducible-research scientific-reports

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Pweave is a scientific report generator and a literate programming tool for Python. It can capture the results and plots from data analysis and works well with numpy, scipy and matplotlib.

Lists

README 

        
.. image:: https://zenodo.org/badge/doi/10.5281/zenodo.44683.svg

   :target: http://dx.doi.org/10.5281/zenodo.44683

.. image:: https://travis-ci.org/mpastell/Pweave.svg?branch=master

   :target: https://travis-ci.org/mpastell/Pweave

.. image:: https://coveralls.io/repos/github/mpastell/Pweave/badge.svg?branch=master

   :target: https://coveralls.io/github/mpastell/Pweave?branch=master



About Pweave

-------------



Pweave is a scientific report generator and a literate programming

tool for Python. Pweave can capture the results and plots from data

analysis and works well with NumPy, SciPy and matplotlib. It is able to run

python code from source document and include the results and capture

`matplotlib `_ plots in the output.



Pweave is good for creating reports, tutorials, presentations etc. with embedded python

code It can also be used to make websites together with e.g. Sphinx or rest2web.



Features:

---------



* Python 3.4, 3.5 and 3.6 compatibility

* Code is run using jupyter_client giving the possibility to run code using any

  installed kernel (including python2) via `--kernel` argument. Some chunk options only work for Python.

* Support for IPython magics and rich output.

* Produce reST, Sphinx, Latex, HTML and markdown (pandoc and leanpub) output from several input formats.



    - Noweb  uses `noweb `_ syntax for separating code from documentation.

    - Markdown. Run code from markdown code blocks.

    - Script. Python script with special markup in comments.



* **Execute python code** in the chunks and **capture** input and output to a report.

* **Use hidden code chunks,** i.e. code is executed, but not printed in the output file.

* Capture matplotlib graphics.

* Evaluate inline code in documentation chunks marked using ``<% %>`` and ``<%= %>``.

* Cache all code and results from previous runs for fast report

  generation when you are only working with documentation. Inline code

  will be hidden in documentation mode.

* Supports reST, LaTeX, HTML or markdown for document chunks

* Publish reports from Python scripts. Similar to R markdown.

* Run from command line or interpreter.



Install

-----------------------



From PyPi::



  pip install --upgrade Pweave



with conda::



  conda install -c conda-forge pweave



or download the source and run::



  python setup.py install



Pweave documentation can be found from the website http://mpastell.com/pweave



Release Notes

-------------



See `CHANGELOG.txt `_ for changes in each release.



License information

-------------------



See the file "LICENSE" for information on the history of this

software, terms & conditions for usage, and a DISCLAIMER OF ALL

WARRANTIES.