https://github.com/mohuangx/SAVER

Single-cell RNA-seq Gene Expression Recovery
https://github.com/mohuangx/SAVER

Last synced: 23 days ago
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Single-cell RNA-seq Gene Expression Recovery

• Host: GitHub
• URL: https://github.com/mohuangx/SAVER
• Owner: mohuangx
• Created: 2017-04-29T01:10:18.000Z (about 7 years ago)
• Default Branch: master
• Last Pushed: 2022-06-13T01:37:17.000Z (about 2 years ago)
• Last Synced: 2024-05-31T00:07:39.283Z (about 1 month ago)
• Language: R
• Size: 3.88 MB
• Stars: 103
• Watchers: 4
• Forks: 18
• Open Issues: 11
• Metadata Files:
  • Readme: README.md

Lists

• awesome_single_cell - SAVER - [R] - SAVER (Single-cell Analysis Via Expression Recovery) implements a regularized regression prediction and empirical Bayes method to recover the true gene expression profile in noisy and sparse single-cell RNA-seq data. (Software packages / RNA-seq)
• awesome-single-cell - SAVER - [R] - SAVER (Single-cell Analysis Via Expression Recovery) implements a regularized regression prediction and empirical Bayes method to recover the true gene expression profile in noisy and sparse single-cell RNA-seq data. (Software packages / RNA-seq)
• awesome-single-cell - SAVER - [R] - SAVER (Single-cell Analysis Via Expression Recovery) implements a regularized regression prediction and empirical Bayes method to recover the true gene expression profile in noisy and sparse single-cell RNA-seq data. (Software packages / RNA-seq)

README

        
[![Travis-CI Build Status](https://travis-ci.org/mohuangx/SAVER.svg?branch=master)](https://travis-ci.org/mohuangx/SAVER)

[![CRAN Version](https://www.r-pkg.org/badges/version/SAVER)](https://cran.r-project.org/package=SAVER)

# SAVER 1.1.3

SAVER (Single-cell Analysis Via Expression Recovery) implements a regularized regression prediction and empirical Bayes method to recover the true gene expression profile in noisy and sparse single-cell RNA-seq data.

## Installation

You can install SAVER from CRAN by running:

```R

install.packages("SAVER")

library(SAVER)

```

You can also install the most recent updates of SAVER from github with:

```R

# install.packages("devtools")

devtools::install_github("mohuangx/SAVER")

```

## Reference

For more information about the method, check out the [website](https://mohuangx.github.io/SAVER/),  [tutorial](https://mohuangx.github.io/SAVER/articles/saver-tutorial.html), and [paper](https://doi.org/10.1038/s41592-018-0033-z).