https://github.com/hemberg-lab/sc3

A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments
https://github.com/hemberg-lab/sc3

bioconductor-package human-cell-atlas single-cell-rna-seq

Last synced: 23 days ago
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A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments

• Host: GitHub
• URL: https://github.com/hemberg-lab/sc3
• Owner: hemberg-lab
• License: gpl-3.0
• Created: 2016-01-28T20:25:21.000Z (over 8 years ago)
• Default Branch: master
• Last Pushed: 2021-06-28T06:03:42.000Z (about 3 years ago)
• Last Synced: 2024-06-04T09:56:28.110Z (28 days ago)
• Topics: bioconductor-package, human-cell-atlas, single-cell-rna-seq
• Language: R
• Homepage: http://bioconductor.org/packages/SC3
• Size: 13.5 MB
• Stars: 116
• Watchers: 11
• Forks: 55
• Open Issues: 19
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Lists

• awesome_single_cell - SC3 - [R] - SC3 is a tool for the unsupervised clustering of cells from single cell RNA-Seq experiments. (Software packages / RNA-seq)
• awesome-single-cell - SC3 - [R] - SC3 is a tool for the unsupervised clustering of cells from single cell RNA-Seq experiments. (Software packages / Cell clustering)
• awesome-single-cell - SC3 - [R] - SC3 is a tool for the unsupervised clustering of cells from single cell RNA-Seq experiments. (Software packages / RNA-seq)

README

        



__Q__: What is this?  

__A__: __SC3__ is a tool for the unsupervised clustering of cells from single cell RNA-Seq experiments. __SC3__ main page is on [BioConductor](http://bioconductor.org/packages/SC3/).

__Q__: How to install/run __SC3__?  

__A__: Please follow the SC3 manual from its [BioConductor page](http://bioconductor.org/packages/SC3/).

If you would like to install the latest development version of SC3 please install it from the GitHub repository:

```

install.packages("devtools")

devtools::install_github("hemberg-lab/SC3")

```

__Q__: Where can I report bugs, comments, issues or suggestions?  

__A__: Please use [this page](https://github.com/hemberg-lab/SC3/issues).

__Q__: Where can I ask questions about __SC3__?  

__A__: Please use [this page](https://support.bioconductor.org/p/new/post/?tag_val=SC3).

__Q__: Is __SC3__ published?  

__A__: Yes, __SC3__ is published in [Nature Methods](http://dx.doi.org/10.1038/nmeth.4236).

__Q__: What is __SC3__ licence?  

__A__: GPL-3