https://github.com/sdparekh/zUMIs

zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
https://github.com/sdparekh/zUMIs

barcodes dge expression fastq pipeline rna-seq rnaseq single-cell umi

Last synced: 23 days ago
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zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs

• Host: GitHub
• URL: https://github.com/sdparekh/zUMIs
• Owner: sdparekh
• License: gpl-3.0
• Created: 2017-06-20T11:58:07.000Z (about 7 years ago)
• Default Branch: main
• Last Pushed: 2023-05-15T12:32:20.000Z (about 1 year ago)
• Last Synced: 2024-02-24T16:34:13.944Z (4 months ago)
• Topics: barcodes, dge, expression, fastq, pipeline, rna-seq, rnaseq, single-cell, umi
• Language: R
• Size: 1.79 GB
• Stars: 260
• Watchers: 13
• Forks: 68
• Open Issues: 28
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Lists

• awesome_single_cell - zUMIs - [R, perl, shell] - [zUMIs: A fast and flexible pipeline to process RNA-seq data with UMIs.](https://www.biorxiv.org/content/early/2017/10/18/153940) (Software packages / RNA-seq)
• awesome-single-cell - zUMIs - [R, perl, shell] - [zUMIs: A fast and flexible pipeline to process RNA-seq data with UMIs.](https://www.biorxiv.org/content/early/2017/10/18/153940) (Software packages / RNA-seq)
• awesome-single-cell - zUMIs - [R, perl, shell] - [zUMIs: A fast and flexible pipeline to process RNA-seq data with UMIs.](https://www.biorxiv.org/content/early/2017/10/18/153940) (Software packages / RNA-seq)