https://github.com/BauerLab/GT-Scan2

Chromatin- and Transcription-aware target site optimization tool for CRISPR/CAS9
https://github.com/BauerLab/GT-Scan2

Last synced: 11 days ago
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Chromatin- and Transcription-aware target site optimization tool for CRISPR/CAS9

• Host: GitHub
• URL: https://github.com/BauerLab/GT-Scan2
• Owner: BauerLab
• Created: 2016-07-29T07:12:31.000Z (almost 8 years ago)
• Default Branch: master
• Last Pushed: 2017-08-22T00:44:24.000Z (almost 7 years ago)
• Last Synced: 2024-03-01T15:36:27.666Z (4 months ago)
• Language: R
• Homepage:
• Size: 447 KB
• Stars: 5
• Watchers: 3
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

Lists

• awesome-CRISPR - GT-Scan2 - [R] - It is Chromatin- and Transcription-aware target site optimization tool for CRISPR/CAS9. (Off-target prediction algorithms)
• awesome-CRISPR - GT-Scan2 - [R] - It is Chromatin- and Transcription-aware target site optimization tool for CRISPR/CAS9. (Off-target prediction algorithms)
• awesome-CRISPR - GT-Scan2 - [R] - It is Chromatin- and Transcription-aware target site optimization tool for CRISPR/CAS9. (Off-target prediction algorithms)

README

        
# GT-Scan2 workflow

**data** contains the data files used to construct and test the model

- Chari.featureTable.txt: feature matrix for the Chari et al 2015 dataset

- Chari.scores.txt: WU-CRISPR, sgRNA Scorer and Azimuth scores for the Chari et al 2015 dataset

- Horlbeck.featureTable.txt: feature matrix for the Horlbeck et al 2016 dataset

- Horlbeck.scores.txt: WU-CRISPR, sgRNA Scorer and Azimuth scores for the Horlbeck et al 2016 dataset

**code/GT-Scan2.final.R** workflow for construction and testing of model