https://github.com/sokrypton/ColabDesign

Making Protein Design accessible to all via Google Colab!
https://github.com/sokrypton/ColabDesign

Last synced: 15 days ago
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Making Protein Design accessible to all via Google Colab!

• Host: GitHub
• URL: https://github.com/sokrypton/ColabDesign
• Owner: sokrypton
• Created: 2022-02-02T03:43:06.000Z (over 2 years ago)
• Default Branch: main
• Last Pushed: 2024-04-18T02:32:13.000Z (3 months ago)
• Last Synced: 2024-04-18T17:58:26.856Z (3 months ago)
• Language: Python
• Size: 248 MB
• Stars: 491
• Watchers: 24
• Forks: 108
• Open Issues: 40
• Metadata Files:
  • Readme: README.md

Lists

• awesome-protein-design-software - ColabDesign

README

        
# ColabDesign

### Making Protein Design accessible to all via Google Colab! 

- P(structure | sequence)

  - [TrDesign](/tr) - using TrRosetta for design

  - [AfDesign](/af) - using AlphaFold for design

  - [WIP] [RfDesign](https://github.com/RosettaCommons/RFDesign) - using RoseTTAFold for design

- P(sequence | structure)

  - [ProteinMPNN](/mpnn)

  - [WIP] TrMRF

- P(sequence)

  - [WIP] [MSA_transformer](/esm_msa)

  - [WIP] [SEQ](/seq) - (GREMLIN, mfDCA, arDCA, plmDCA, bmDCA, etc)

- P(structure)

  - [Rfdiffusion](/rf)

### Where can I chat with other ColabDesign users?

  - See our [Discord](https://discord.gg/gna8maru7d) channel!

### Presentations

[Slides](https://docs.google.com/presentation/d/1Zy7lf_LBK0_G3e7YQLSPP5aj_-AR5I131fTsxJrLdg4/)

[Talk](https://www.youtube.com/watch?v=2HmXwlKWMVs)

### Contributors:

- Sergey Ovchinnikov [@sokrypton](https://github.com/sokrypton)

- Shihao Feng [@JeffSHF](https://github.com/JeffSHF)

- Justas Dauparas [@dauparas](https://github.com/dauparas)

- Weikun.Wu [@guyujun](https://github.com/guyujun) (from [Levinthal.bio](http://levinthal.bio/en/))

- Christopher Frank [@chris-kafka](https://github.com/chris-kafka)