https://github.com/jmtyszka/bidskit

Utility functions for working with DICOM and BIDS neuroimaging data
https://github.com/jmtyszka/bidskit

bids-format conversion dicom fmri-preproc mri neuroimaging nifti-images

Last synced: 9 days ago
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Utility functions for working with DICOM and BIDS neuroimaging data

• Host: GitHub
• URL: https://github.com/jmtyszka/bidskit
• Owner: jmtyszka
• License: mit
• Created: 2016-08-04T00:40:44.000Z (almost 8 years ago)
• Default Branch: master
• Last Pushed: 2024-05-03T23:12:40.000Z (about 2 months ago)
• Last Synced: 2024-06-05T10:44:14.800Z (27 days ago)
• Topics: bids-format, conversion, dicom, fmri-preproc, mri, neuroimaging, nifti-images
• Language: Python
• Size: 975 KB
• Stars: 60
• Watchers: 9
• Forks: 40
• Open Issues: 16
• Metadata Files:
  • Readme: README.md
  • Changelog: CHANGELOG.md
  • License: LICENSE.md

Lists

• awesome-dicom - bidskit - CLI for converting a directory of DICOM files into a [BIDS](https://bids.neuroimaging.io/)-compliant dataset. (Libraries / Python)

README

        
# BIDSKIT

### Version 2024.5.3

Python utilities for converting from DICOM to BIDS neuroimaging formats.

The *bidskit* console command takes a directory tree containing imaging series from one or more subjects (eg T1w MPRAGE, BOLD EPI, Fieldmaps), converts the imaging data to Nifti-1 format with JSON metadata files (sidecars) and populates a directory tree according to the latest BIDS specification.

## Documentation

#### [Installation Instructions](docs/Installation.md)

#### [Quick Start Guide](docs/QuickStart.md)

#### [Useful Features](docs/Features.md)

#### [Flywheel Support](docs/Flywheel.md)

## Bugs and Feature Requests 

Let us know about bugs and feature requests through this repo's

[GitHub Issues](https://github.com/jmtyszka/bidskit/issues) page.

## Related Projects

- [heudiconv](https://github.com/nipy/heudiconv) General purpose heuristic DICOM converter

- [dcm2bids](https://github.com/cbedetti/Dcm2Bids) Christophe Beddetti's DICOM to BIDS converter