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https://github.com/ComputationalPhysiology/gotran

Library for declaring and translating ODEs
https://github.com/ComputationalPhysiology/gotran

Last synced: 16 days ago
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Library for declaring and translating ODEs

Host: GitHub
URL: https://github.com/ComputationalPhysiology/gotran
Owner: ComputationalPhysiology
License: lgpl-3.0
Created: 2019-09-05T09:19:44.000Z (almost 5 years ago)
Default Branch: main
Last Pushed: 2024-06-03T20:46:37.000Z (about 1 month ago)
Last Synced: 2024-06-15T01:41:15.361Z (22 days ago)
Language: Python
Homepage: http://computationalphysiology.github.io/gotran/
Size: 10.7 MB
Stars: 2
Watchers: 3
Forks: 1
Open Issues: 4
Metadata Files:
- Readme: README.md
- Contributing: CONTRIBUTING.md
- License: LICENSE

Lists

awesome - gotran - Library for declaring ODEs (Simulation software / Cellular modeling)

README

[![CI](https://github.com/ComputationalPhysiology/gotran/actions/workflows/main.yml/badge.svg)](https://github.com/ComputationalPhysiology/gotran/actions/workflows/main.yml)
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[![coverage](https://img.shields.io/endpoint?url=https://gist.githubusercontent.com/finsberg/a7290de789564f03eb6b1ee122fce423/raw/gotran-badge.json)](https://img.shields.io/endpoint?url=https://gist.githubusercontent.com/finsberg/a7290de789564f03eb6b1ee122fce423/raw/gotran-badge.json)

# Gotran - General ODE TRAnslator

Gotran:

- provides a Python interface to declare arbitrary ODEs.

- provides an interface for generating CUDA/C/C++/OpenCL/Julia/Python/Matlab code for a number of functions including the right hand side and symbolic generation of a Jacobian.

- is intentionally lightweight, and could be interfaced by other
Python libraries needing functionalities to abstract a general
ODE.

- depends on NumPy, and on SymPy. See further instructions in
INSTALL

- can load models from external ODE description files such as CellML

## Install

You can install gotran through pip

```
python -m pip install gotran
```

or if you want to work with the latest version you can install the developement version by either cloning the repository and run

```
python -m pip install git+https://github.com/ComputationalPhysiology/gotran.git
```

## Documentation

Documentation can be found here:

## Source code

Source code can be found at .

## License

gotran is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

gotran is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details.

You should have received a copy of the GNU Lesser General Public License along with gotran. If not, see .

## Contributors

Gotran is developed by Johan Hake.
The version of gotran found in this repository is maintained by Henrik Finsberg and Kristian Hustad.