https://bernatgel.github.io/karyoploter_tutorial/

Examples on how to use the karyoploteR R/Bioconductor package
https://bernatgel.github.io/karyoploter_tutorial/

bioconductor bioinformatics data-visualization genomics-visualization plotting-in-r rstats tutorial

Last synced: 6 days ago
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Examples on how to use the karyoploteR R/Bioconductor package

• Host: GitHub
• URL: https://bernatgel.github.io/karyoploter_tutorial/
• Owner: bernatgel
• Created: 2017-01-17T10:10:21.000Z (over 7 years ago)
• Default Branch: master
• Last Pushed: 2023-02-03T11:49:10.000Z (over 1 year ago)
• Last Synced: 2024-05-22T00:11:27.825Z (about 1 month ago)
• Topics: bioconductor, bioinformatics, data-visualization, genomics-visualization, plotting-in-r, rstats, tutorial
• Size: 20.4 MB
• Stars: 10
• Watchers: 2
• Forks: 4
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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• awesome-ggplot -

README

        
[![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](http://www.repostatus.org/badges/latest/active.svg)](http://www.repostatus.org/#active)

# Examples of plots created with karyoploteR

This repo contains the code to build a github.io page with a tutorial and a number of small examples on how to use the Bioconductor package [karyoploteR](http://bioconductor.org/packages/karyoploteR) 

to create karyoplots, that is, the chromosome ideograms accompained by any arbitrary

data.

They can be found at [https://bernatgel.github.io/karyoploter_tutorial/](https://bernatgel.github.io/karyoploter_tutorial/)

![Multiple Data Types Figure](https://raw.githubusercontent.com/bernatgel/karyoploter_tutorial/master/docs/Examples/MultipleDataTypes/images/Figure-1.png "Multiple Data Types")

The examples are written in RMarkdown, processed with knitr and published by Jekyll on the Github Pages platform. This code could be easily adapted to create examples pages for other packages if needed.

*** 

For additional documentation on karyoploteR, please refer to the [vignette](http://bioconductor.org/packages/devel/bioc/vignettes/karyoploteR/inst/doc/karyoploteR.pdf) and the [reference manual](http://bioconductor.org/packages/devel/bioc/manuals/karyoploteR/man/karyoploteR.pdf)