https://github.com/omnideconv/immunedeconv

A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods
https://github.com/omnideconv/immunedeconv

Last synced: about 1 month ago
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A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods

• Host: GitHub
• URL: https://github.com/omnideconv/immunedeconv
• Owner: omnideconv
• License: other
• Created: 2018-03-21T11:24:26.000Z (over 6 years ago)
• Default Branch: master
• Last Pushed: 2024-05-06T17:06:30.000Z (about 2 months ago)
• Last Synced: 2024-05-18T20:42:49.125Z (about 1 month ago)
• Language: R
• Homepage: https://omnideconv.org/immunedeconv/index.html
• Size: 118 MB
• Stars: 406
• Watchers: 13
• Forks: 97
• Open Issues: 31
• Metadata Files:
  • Readme: README.md
  • Contributing: CONTRIBUTING.md
  • License: LICENSE

Lists

• Awesome-Bioinformatics-Benchmarks - R package called immunedeconv - lab/immune_deconvolution_benchmark) available so that others can reproduce/extend it to test their own tools/methods. (RNA-seq / Cell-Type Deconvolution)
• awesome-deconvolution - immunedeconv