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https://github.com/sinhrks/ggfortify

Define fortify and autoplot functions to allow ggplot2 to handle some popular R packages.
https://github.com/sinhrks/ggfortify

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Define fortify and autoplot functions to allow ggplot2 to handle some popular R packages.

Lists

README 

        
**Note**: This package has been maintained by `@terrytangyuan `_ since 2015. Please `consider sponsoring `_!



.. image:: http://www.r-pkg.org/badges/version/ggfortify

    :target: https://CRAN.R-project.org/package=ggfortify 

.. image:: https://cranlogs.r-pkg.org/badges/grand-total/ggfortify

    :target: https://CRAN.R-project.org/package=ggfortify 

.. image:: https://coveralls.io/repos/sinhrks/ggfortify/badge.svg?branch=master&service=github

    :target: https://coveralls.io/github/sinhrks/ggfortify?branch=master

.. image:: https://img.shields.io/badge/stackoverflow-ggfortify-green.svg

    :target: https://stackoverflow.com/questions/tagged/ggfortify



ggfortify

=========



This package offers ``fortify`` and ``autoplot`` functions to allow automatic ``ggplot2`` to visualize statistical result of popular R packages. Check out our `R Journal paper `_ for more details on the overall architecture design and a gallery of visualizations created with this package. Also check out `autoplotly package `_ that could automatically generate interactive visualizations with `plotly.js `_ style based on ``ggfortify``. The generated visualizations can also be easily extended using ``ggplot2`` syntax while staying interactive.



Installation

------------



- Install the latest stable release from CRAN: ::



    install.packages('ggfortify')



- Install the development version from Github: ::



    if (!require("remotes")) install.packages("remotes")

    remotes::install_github('sinhrks/ggfortify')



Examples

--------



* `Concepts and Basics of ggfortify `_

* `Plotting Diagnostics for LM and GLM with ggplot2 and ggfortify `_

* `Plotting Time Series with ggplot2 and ggfortify `_

* `Plotting PCA, clustering, LFDA and MDS `_

* `Plotting Survival Curves using ggplot2 and ggfortify `_

* `Plotting Probability Distributions with ggplot2 and ggfortify `_

* `Automatic Generation of Interactive Visualizations in ggplot2 and plotly Styles `_

* `一行R代码实现繁琐的可视化 `_



Reference/Citation

------------



To cite ggfortify in publications, please use (available via ``citation("ggfortify")``):



  Yuan Tang, Masaaki Horikoshi, and Wenxuan Li (2016). ggfortify: Unified Interface to Visualize

  Statistical Result of Popular R Packages. The R Journal, 8.2, 478-489.



  Masaaki Horikoshi and Yuan Tang (2016). ggfortify: Data Visualization Tools for Statistical

  Analysis Results. https://CRAN.R-project.org/package=ggfortify



Coverage

-----------



This covers following classes:



- ``base::matrix``

- ``base::table`` (supports ``fortify`` only)

- ``cluster::clara``

- ``cluster::fanny``

- ``cluster::pam``

- ``cluster::silhouette``

- ``changepoint::cpt``

- ``fGarch::fGARCH``

- ``forecast::bats``

- ``forecast::forecast``

- ``forecast::ets``

- ``forecast::nnetar``

- ``fracdiff::fracdiff``

- ``glmnet::cv.glmnet``

- ``glmnet::glmnet``

- ``KFAS::KFS``

- ``KFAS::signal`` (inference)

- ``lfda::lfda``

- ``lfda::klfda``

- ``lfda::self``

- ``maps::map``

- ``MASS::isoMDS`` (inference)

- ``MASS::sammon`` (inference)

- ``raster::RasterBrick``

- ``raster::RasterCommon``

- ``raster::RasterLayer``

- ``raster::RasterStack``

- ``ROCR::performance``

- ``sp::Line``

- ``sp::Lines``

- ``sp::Polygon``

- ``sp::Polygons``

- ``sp::SpatialLines``

- ``sp::SpatialLinesDataFrame``

- ``sp::SpatialPoints``

- ``sp::SpatialPointsDataFrame``

- ``sp::SpatialPolygons``

- ``sp::SpatialPolygonsDataFrame``

- ``splines::basis``

- ``stats::acf``

- ``stats::ar``

- ``stats::Arima``

- ``stats::cmdscale`` (inference)

- ``stats::decomposed.ts``

- ``stats::density``

- ``stats::factanal``

- ``stats::glm``

- ``stats::HoltWinters``

- ``stats::kmeans``

- ``stats::lm``

- ``stats::prcomp``

- ``stats::princomp``

- ``stats::spec``

- ``stats::stepfun``

- ``stats::stl``

- ``stats::ts``

- ``survival::survfit``

- ``survival::survfit.cox``

- ``survival::survfitms``

- ``strucchange::breakpoints``

- ``strucchange::breakpointsfull``

- ``timeSeries::timeSeries``

- ``tseries::irts``

- ``vars::varprd``

- ``xts::xts``

- ``zoo::zooreg``



Helper Functions

----------------



- ``ggdistribution`` to plot PDF/CDF

- ``ggcpgram`` to plot ``cpgram``

- ``ggtsdiag`` to plot ``tsdiag``

- ``ggfreqplot`` to generalize ``monthplot``



ggplot2 Families

----------------



There are some useful plotting packages using ggplot2. ``ggfortify`` will not focus on area already covered by these packages.



* `GGally `_

* `dendextend:ggdend `_

* `ggRandomForests `_

* `ggmcmc `_