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https://github.com/poissonconsulting/readwritesqlite
An R package that enhances writing and reading data to and from SQLite databases
https://github.com/poissonconsulting/readwritesqlite
cran dbi log metadata posixct r read rstats sfc sqlite units write
Last synced: about 2 months ago
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An R package that enhances writing and reading data to and from SQLite databases
- Host: GitHub
- URL: https://github.com/poissonconsulting/readwritesqlite
- Owner: poissonconsulting
- License: other
- Created: 2018-11-21T23:26:36.000Z (over 5 years ago)
- Default Branch: main
- Last Pushed: 2022-10-16T23:14:24.000Z (over 1 year ago)
- Last Synced: 2024-05-09T07:39:42.959Z (2 months ago)
- Topics: cran, dbi, log, metadata, posixct, r, read, rstats, sfc, sqlite, units, write
- Language: R
- Homepage: https://poissonconsulting.github.io/readwritesqlite
- Size: 1.17 MB
- Stars: 37
- Watchers: 6
- Forks: 1
- Open Issues: 8
-
Metadata Files:
- Readme: README.Rmd
- Contributing: .github/CONTRIBUTING.md
- License: LICENSE
- Code of conduct: .github/CODE_OF_CONDUCT.md
Lists
- awesome-stars - poissonconsulting/readwritesqlite - An R package that enhances writing and reading data to and from SQLite databases (R)
- jimsghstars - poissonconsulting/readwritesqlite - An R package that enhances writing and reading data to and from SQLite databases (R)
README
---
output: github_document
---
```{r setup, include = FALSE}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>",
fig.path = "man/figures/README-",
out.width = "100%"
)
```
# readwritesqlite 
[](https://lifecycle.r-lib.org/articles/stages.html#stable)
[](https://github.com/poissonconsulting/readwritesqlite/actions/workflows/R-CMD-check.yaml)
[](https://codecov.io/github/poissonconsulting/readwritesqlite?branch=master)
[](https://opensource.org/licenses/MIT)
[](https://cran.r-project.org/package=readwritesqlite)
# readwritesqlite
SQLite databases are a simple, powerful way to validate, query and store related data frames particularly when used with the RSQLite package.
However, current solutions do not preserve (or check) meta data, log changes or provide particularly useful error messages.
`readwritesqlite` is an R package that by default
- preserves (and subsequently checks) the following metadata
- the class for logical, Date and hms columns
- the levels for factors and ordered factors
- the time zone for POSIXct columns
- the units for unit columns
- the projection for sfc columns
- the sf column for sf objects
- logs
- the date time
- system user
- table creation and data insertion or deletion
- provides informative error messages if
- columns are missing
- NOT NULL columns contain missing values
- PRIMARY KEY column values in the input data are not unique
`readwritesqlite` also allows the user to
- write environments (or named lists) of data frames (useful for populating databases)
- delete existing data (and meta data) before writing (useful for converting an existing database)
- replace existing data which causes unique or primary key conflicts (useful for updating databases)
- confirm data can be written without committing any changes (useful for checking data)
- check all existing tables are written to (useful for data transfers)
- rearrange and add levels for factors and add levels for ordered factors
- initialize the meta data for a new table by writing a data frame or sf data frame with no rows but logical, Date, factor, ordered, POSIXct, sfc or unit columns (useful for creating an empty database with additional informative checks)
`readwritesqlite` provides all these features through its `rws_write()` and `rws_read()` functions.
The `rws_query()` function allows the user to pass a SQL query.
By default, the metadata (except the setting of the sf column) is, if unambiguously defined, preserved for each column in the final query.
To enable this functionality the user should ensure that a) columns in tables which will be referenced in the same query should have different names or identical metadata and b) column names in the final query should match those in the referenced base tables.
The init, meta and log data are stored in separate tables from the main data which means that they do not interfere with other ways of interacting with a SQLite database.
## Installation
To install the latest release from [CRAN](https://cran.r-project.org)
```r
install.packages("readwritesqlite")
```
To install the developmental version from [GitHub](https://github.com/poissonconsulting/readwritesqlite)
```r
# install.packages("remotes")
remotes::install_github("poissonconsulting/readwritesqlite")
```
## Demonstration
Key attribute information is preserved for many classes.
```{r}
library(readwritesqlite)
# for nicer printing of data frames
library(tibble)
library(sf)
conn <- rws_connect()
rws_data <- readwritesqlite::rws_data
rws_data
rws_write(rws_data, exists = FALSE, conn = conn)
rws_read_table("rws_data", conn = conn)
```
The attribute information is stored in the metadata table
```{r}
rws_read_meta(conn = conn)
```
The user can add descriptions if they wish.
```{r}
rws_describe_meta("rws_data", "posixct", "The time of a visit", conn = conn)
rws_describe_meta("rws_data", "units", "The site length.", conn = conn)
rws_read_meta(conn = conn)
```
The log provides a record of data changes that have been made using readwritesqlite.
``` r
rws_read_log(conn = conn)
#> # A tibble: 2 x 5
#> DateTimeUTCLog UserLog TableLog CommandLog NRowLog
#>
#> 1 2019-07-07 16:05:10 joe RWS_DATA CREATE 0
#> 2 2019-07-07 16:05:11 joe RWS_DATA INSERT 3
```
Don't forget to disconnect when done.
```{r}
rws_disconnect(conn)
```
## Information
For more information on using `readwritesqlite` see the vignette [using-readwritesqlite](https://poissonconsulting.github.io/readwritesqlite/articles/using-readwritesqlite.html).
## Contribution
Please report any [issues](https://github.com/poissonconsulting/readwritesqlite/issues).
[Pull requests](https://github.com/poissonconsulting/readwritesqlite/pulls) are always welcome.
## Code of Conduct
Please note that the readwritesqlite project is released with a [Contributor Code of Conduct](https://contributor-covenant.org/version/2/0/CODE_OF_CONDUCT.html).
By contributing to this project, you agree to abide by its terms.