Ecosyste.ms: Awesome

An open API service indexing awesome lists of open source software.

https://github.com/xCDAT/xcdat

An extension of xarray for climate data analysis on structured grids.
https://github.com/xCDAT/xcdat

cdat cf-conventions climate-analysis climate-data climate-data-analysis climate-research climate-science climate-sciences cmip cmip6 e3sm pcmdi python xarray xcdat

Last synced: 2 months ago
JSON representation

An extension of xarray for climate data analysis on structured grids.

Lists

README 

        
.. raw:: html



   


      xCDAT logo

   



.. container::



   .. raw:: html



      



   Xarray Climate Data Analysis Tools



   +--------------------+------------------------------------------------------+

   |                    | Badges                                               |

   +====================+======================================================+

   | Distribution       | |conda-forge| |platforms| |conda-downloads|          |

   +--------------------+------------------------------------------------------+

   | Citation           | |zenodo-doi|                                         |

   +--------------------+------------------------------------------------------+

   | DevOps             | |CI/CD Build Workflow| |codecov| |docs|              |

   +--------------------+------------------------------------------------------+

   | Quality Assurance  | |pre-commit| |black| |flake8| |mypy|                 |

   +--------------------+------------------------------------------------------+



   .. raw:: html



      



.. |conda-forge| image:: https://img.shields.io/conda/vn/conda-forge/xcdat.svg

   :target: https://anaconda.org/conda-forge/xcdat

.. |platforms| image:: https://img.shields.io/conda/pn/conda-forge/xcdat.svg

   :target: https://anaconda.org/conda-forge/xcdat

.. |conda-downloads| image:: https://anaconda.org/conda-forge/xcdat/badges/downloads.svg

   :target: https://anaconda.org/conda-forge/xcdat

.. |zenodo-doi| image:: https://zenodo.org/badge/354103918.svg

   :target: https://zenodo.org/badge/latestdoi/354103918

.. |CI/CD Build Workflow| image:: https://github.com/xCDAT/xcdat/actions/workflows/build_workflow.yml/badge.svg

   :target: https://github.com/xCDAT/xcdat/actions/workflows/build_workflow.yml

.. |docs| image:: https://readthedocs.org/projects/xcdat/badge/?version=latest

   :target: https://xcdat.readthedocs.io/en/latest/?badge=latest

.. |codecov| image:: https://codecov.io/gh/xCDAT/xcdat/branch/main/graph/badge.svg?token=UYF6BAURTH

   :target: https://codecov.io/gh/xCDAT/xcdat

.. |pre-commit| image:: https://img.shields.io/badge/pre--commit-enabled-brightgreen?logo=pre-commit&logoColor=white

   :target: https://github.com/pre-commit/pre-commit

.. |black| image:: https://img.shields.io/badge/code%20style-black-000000.svg

   :target: https://github.com/psf/black

.. |flake8| image:: https://img.shields.io/badge/flake8-enabled-green

   :target: https://github.com/PyCQA/flake8

.. |mypy| image:: http://www.mypy-lang.org/static/mypy_badge.svg

   :target: http://mypy-lang.org/



xCDAT is an extension of `xarray`_ for climate data analysis on structured grids. It

serves as a modern successor to the Community Data Analysis Tools (`CDAT`_) library.



**Useful links**:

`Documentation `__ |

`Code Repository `__ |

`Issues `__ |

`Discussions `__ |

`Releases `__ |

`Mailing List `__



Project Motivation

------------------



The goal of xCDAT is to provide generalizable features and utilities for simple and

robust analysis of climate data. xCDAT's design philosophy is focused on reducing the

overhead required to accomplish certain tasks in xarray. xCDAT aims to be compatible

with structured grids that are `CF-compliant`_ (e.g., CMIP6). Some key xCDAT features

are inspired by or ported from the core CDAT library, while others leverage powerful

libraries in the xarray ecosystem (e.g., `xESMF`_, `xgcm`_, `cf_xarray`_) to deliver

robust APIs.



The xCDAT core team's mission is to provide a maintainable and extensible package

that serves the needs of the climate community in the long-term. We are excited

to be working on this project and hope to have you onboard!



.. _CF-compliant: https://cfconventions.org/

.. _xarray: https://github.com/pydata/xarray

.. _CDAT: https://github.com/CDAT/cdat



Getting Started

---------------



The best resource for getting started is the `xCDAT documentation website`_.

Our documentation provides general guidance for setting up xCDAT in an Anaconda

environment on your local `computer`_ or on an `HPC/Jupyter`_ environment. We also

include an `API Overview`_ and `Gallery`_ to highlight xCDAT functionality.



.. _xCDAT documentation website: https://xcdat.readthedocs.io/en/stable/

.. _computer: https://xcdat.readthedocs.io/en/stable/getting-started.html

.. _HPC/Jupyter: https://xcdat.readthedocs.io/en/stable/getting-started-hpc-jupyter.html

.. _API Overview: https://xcdat.readthedocs.io/en/stable/api.html

.. _Gallery: https://xcdat.readthedocs.io/en/stable/gallery.html



Community

---------



xCDAT is a community-driven open source project. We encourage discussion on topics such

as version releases, feature suggestions, and architecture design on the

`GitHub Discussions`_ page.



Subscribe to our `mailing list`_ for news and announcements related to xCDAT,

such as software version releases or future roadmap plans.



Please note that xCDAT has a `Code of Conduct`_. By participating in the xCDAT

community, you agree to abide by its rules.



.. _GitHub Discussions: https://github.com/xCDAT/xcdat/discussions

.. _Code of Conduct: CODE-OF-CONDUCT.rst

.. _mailing list: https://groups.google.com/g/xcdat



Contributing

------------



We welcome and appreciate contributions to xCDAT. Users and contributors can view and

open issues on our `GitHub Issue Tracker`_.



For more instructions on how to contribute, please checkout our `Contributing Guide`_.



.. _GitHub Issue Tracker: https://github.com/xCDAT/xcdat/issues

.. _Contributing Guide: https://xcdat.readthedocs.io/en/stable/contributing.html



Features

--------



* Extension of xarray's ``open_dataset()`` and ``open_mfdataset()`` with post-processing options



  * Generate bounds for axes supported by ``xcdat`` if they don't exist in the Dataset

  * Optional selection of single data variable to keep in the Dataset (bounds are also

    kept if they exist)

  * Optional decoding of time coordinates



    * In addition to CF time units, also decodes common non-CF time units

      ("months since ...", "years since ...")



  * Optional centering of time coordinates using time bounds

  * Optional conversion of longitudinal axis orientation between [0, 360) and [-180, 180)



* Temporal averaging



  * Time series averages (single snapshot and grouped), climatologies, and departures

  * Weighted or unweighted

  * Optional seasonal configuration (e.g., DJF vs. JFD, custom seasons)



* Geospatial weighted averaging



  * Supports rectilinear grid

  * Optional specification of regional domain



* Horizontal structured regridding



  * Supports rectilinear and curvilinear grids

  * Extends the `xESMF`_ horizontal regridding API

  * Python implementation of  `regrid2`_ for handling cartesian latitude longitude grids



* Vertical structured regridding



  * Support rectilinear and curvilinear grids

  * Extends the `xgcm`_ vertical regridding API



Things We Are Striving For

--------------------------



* xCDAT supports CF compliant datasets, but will also strive to support datasets with

  common non-CF compliant metadata (e.g., time units in "months since ..." or "years

  since ...")



  * xCDAT leverages `cf_xarray`_ to interpret CF attributes on ``xarray`` objects

  * Refer to `CF Convention`_ for more information on CF attributes



* Robust handling of dimensions and their coordinates and coordinate bounds



  * Coordinate variables are retrieved with ``cf_xarray`` using CF axis names or

    coordinate names found in xarray object attributes. Refer to `Metadata Interpretation`_

    for more information.

  * Bounds are retrieved with ``cf_xarray`` using the ``"bounds"`` attr

  * Ability to operate on both longitudinal axis orientations, [0, 360) and [-180, 180)



* Support for parallelism using `dask`_ where it is both possible and makes sense



.. _Metadata Interpretation: https://xcdat.readthedocs.io/en/stable/faqs.html#metadata-interpretation

.. _xESMF: https://xesmf.readthedocs.io/en/latest/

.. _regrid2: https://cdms.readthedocs.io/en/latest/regrid2.html

.. _xgcm: https://xgcm.readthedocs.io/en/latest/index.html

.. _dask: https://dask.org/

.. _cf_xarray: https://cf-xarray.readthedocs.io/en/latest/index.html

.. _CF convention: http://cfconventions.org/



Releases

--------

xCDAT (released as ``xcdat``) follows a feedback-driven release cycle using continuous

integration/continuous deployment. Software releases are performed based on the bandwidth

of the development team, the needs of the community, and the priority of bug fixes or

feature updates.



After releases are performed on `GitHub Releases`_, the corresponding ``xcdat`` package

version will be available to download through Anaconda `conda-forge`_ usually within a day.



Subscribe to our `mailing list`_ to stay notified of new releases.



.. _conda-forge: https://anaconda.org/conda-forge/xcdat

.. _GitHub Releases: https://anaconda.org/conda-forge/xcdat



Useful Resources

-----------------



We highly encourage you to checkout the awesome resources below to learn more about

Xarray and Xarray usage in climate science!



- `Official Xarray Tutorials `_

- `Xarray GitHub Discussion Forum `_

- `Pangeo Forum `_

- `Project Pythia `_



Projects Using xCDAT

--------------------



xCDAT is actively being integrated as a core component of the `Program for Climate Model

Diagnosis and Intercomparison (PCMDI) Metrics Package`_ and the `Energy Exascale Earth

System Model Diagnostics (E3SM) Package`_. xCDAT is also included in the `E3SM Unified

Anaconda Environment`_ that is deployed on various U.S. Department of Energy

supercomputers to run E3SM software tools.



.. _Program for Climate Model Diagnosis and Intercomparison (PCMDI) Metrics Package: https://pcmdi.github.io/pcmdi_metrics/

.. _Energy Exascale Earth System Model Diagnostics (E3SM) Package: https://e3sm-project.github.io/e3sm_diags/_build/html/main/index.html

.. _E3SM Unified Anaconda Environment: https://e3sm.org/resources/tools/other-tools/e3sm-unified-environment/



Acknowledgement

---------------



xCDAT is jointly developed by scientists and developers from the Energy Exascale

Earth System Model (`E3SM`_) Project and Program for Climate Model Diagnosis and

Intercomparison (`PCMDI`_). The work is performed for the E3SM project, which is

sponsored by Earth System Model Development (`ESMD`_) program, and the Simplifying ESM

Analysis Through Standards (`SEATS`_) project, which is sponsored by the Regional and

Global Model Analysis (`RGMA`_) program. ESMD and RGMA are programs for the Earth and

Environmental Systems Sciences Division (`EESSD`_) in the Office of Biological and

Environmental Research (`BER`_) within the `Department of Energy`_'s `Office of Science`_.



.. _E3SM: https://e3sm.org/

.. _PCMDI: https://pcmdi.llnl.gov/

.. _SEATS: https://www.seatstandards.org/

.. _ESMD: https://climatemodeling.science.energy.gov/program/earth-system-model-development

.. _RGMA: https://climatemodeling.science.energy.gov/program/regional-global-model-analysis

.. _EESSD: https://science.osti.gov/ber/Research/eessd

.. _BER: https://science.osti.gov/ber

.. _Department of Energy: https://www.energy.gov/

.. _Office of Science: https://science.osti.gov/



Contributors

------------



Thank you to all of our contributors!



.. image:: https://contrib.rocks/image?repo=xCDAT/xcdat

  :alt: xCDAT contributors

  :target: https://github.com/xCDAT/xcdat/graphs/contributors



License

-------



xCDAT is licensed under the terms of the Apache License (Version 2.0 with LLVM exception).



All new contributions must be made under the Apache-2.0 with LLVM exception license.



See `LICENSE`_ and `NOTICE`_ for details.



.. _LICENSE: https://github.com/xCDAT/xcdat/blob/main/LICENSE

.. _NOTICE: https://github.com/xCDAT/xcdat/blob/main/NOTICE



SPDX-License-Identifier: Apache-2.0



``LLNL-CODE-846944``