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https://github.com/shenwei356/bwt

Burrows-Wheeler Transform and FM-index in golang
https://github.com/shenwei356/bwt

bioinformatics burrows-wheeler-transform bwt fm-index

Last synced: 26 days ago
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Burrows-Wheeler Transform and FM-index in golang

Host: GitHub
URL: https://github.com/shenwei356/bwt
Owner: shenwei356
License: mit
Created: 2015-11-08T04:49:00.000Z (over 8 years ago)
Default Branch: master
Last Pushed: 2023-04-07T02:00:12.000Z (about 1 year ago)
Last Synced: 2024-02-09T08:38:57.706Z (4 months ago)
Topics: bioinformatics, burrows-wheeler-transform, bwt, fm-index
Language: Go
Homepage:
Size: 36.1 KB
Stars: 19
Watchers: 4
Forks: 4
Open Issues: 1
Metadata Files:
- Readme: README.md
- License: LICENSE

Lists

awesome-bio-go - bwt - Wheeler Transform and FM-index in Golang. (Sequence Analysis and Manipulation)

README

        # bwt

[![Go Reference](https://pkg.go.dev/badge/github.com/shenwei356/bwt.svg)](https://pkg.go.dev/github.com/shenwei356/bwt)

[![Go Report Card](https://goreportcard.com/badge/github.com/shenwei356/bwt)](https://goreportcard.com/report/github.com/shenwei356/bwt)

Burrows-Wheeler Transform and FM-index in golang

## Install

This package is "go-gettable", just:

    go get -u github.com/shenwei356/bwt

## Licence

Copyright (c) 2015-2021, Wei Shen ([email protected])

[MIT License](https://github.com/shenwei356/bwt/blob/master/LICENSE)

## Other resources

- [String algorithm visualizations](https://curiouscoding.nl/posts/alg-viz/)

- [Linear-time suffix array construction](https://curiouscoding.nl/notes/suffix-array-construction/)

- [BWT and FM-index](https://curiouscoding.nl/notes/bwt/)