https://cole-trapnell-lab.github.io/cicero-release/

https://cole-trapnell-lab.github.io/cicero-release/

Last synced: about 1 month ago
JSON representation

• Host: GitHub
• URL: https://cole-trapnell-lab.github.io/cicero-release/
• Owner: cole-trapnell-lab
• License: mit
• Created: 2018-05-09T18:07:07.000Z (about 6 years ago)
• Default Branch: master
• Last Pushed: 2023-05-04T17:27:43.000Z (about 1 year ago)
• Last Synced: 2023-05-04T18:44:39.691Z (about 1 year ago)
• Language: R
• Homepage: https://cole-trapnell-lab.github.io/cicero-release/
• Size: 21.4 MB
• Stars: 41
• Watchers: 10
• Forks: 10
• Open Issues: 6
• Metadata Files:
  • Readme: README.md
  • License: LICENSE
  • Code of conduct: code-of-conduct.md

Lists

• awesome-atac-analysis - Cicero
• awesome_single_cell - cicero - [R] - Predicts enhancer-gene pairs by co-accessibility. Also adapts [monocle](http://cole-trapnell-lab.github.io/monocle-release/) for single-cell ATAC-seq (clustering, trajectories, differential accessibility). (Software packages / Epigenomics)
• awesome-single-cell - cicero - [R] - Predicts enhancer-gene pairs by co-accessibility. Also adapts [monocle](http://cole-trapnell-lab.github.io/monocle-release/) for single-cell ATAC-seq (clustering, trajectories, differential accessibility). (Software packages / Epigenomics)
• awesome-single-cell - cicero - [R] - Predicts enhancer-gene pairs by co-accessibility. Also adapts [monocle](http://cole-trapnell-lab.github.io/monocle-release/) for single-cell ATAC-seq (clustering, trajectories, differential accessibility). (Software packages / Epigenomics)

README

        
![example workflow](https://github.com/cole-trapnell-lab/cicero-release/actions/workflows/check-standard.yaml/badge.svg)

[![Coverage status](https://codecov.io/gh/cole-trapnell-lab/cicero-release/branch/master/graph/badge.svg)](https://codecov.io/github/cole-trapnell-lab/cicero-release?branch=master)

# Cicero

### Predicting the cis-regulatory landscape

Please see our [website](http://cole-trapnell-lab.github.io/cicero-release/) for information on installing and using Cicero