Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
https://github.com/WillianFuks/tfcausalimpact
Python Causal Impact Implementation Based on Google's R Package. Built using TensorFlow Probability.
https://github.com/WillianFuks/tfcausalimpact
causal-inference causalimpact python tensorflow-probability
Last synced: about 1 month ago
JSON representation
Python Causal Impact Implementation Based on Google's R Package. Built using TensorFlow Probability.
- Host: GitHub
- URL: https://github.com/WillianFuks/tfcausalimpact
- Owner: WillianFuks
- License: apache-2.0
- Created: 2020-08-17T14:57:52.000Z (almost 4 years ago)
- Default Branch: master
- Last Pushed: 2024-05-07T19:20:28.000Z (about 2 months ago)
- Last Synced: 2024-05-08T20:02:39.753Z (about 2 months ago)
- Topics: causal-inference, causalimpact, python, tensorflow-probability
- Language: Python
- Homepage:
- Size: 8.09 MB
- Stars: 579
- Watchers: 13
- Forks: 69
- Open Issues: 38
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Lists
- awesome-marketing-machine-learning - tfcausalimpact
README
# tfcausalimpact
[](https://travis-ci.com/WillianFuks/tfcausalimpact) [](https://coveralls.io/github/WillianFuks/tfcausalimpact?branch=master) [](https://github.com/WillianFuks/tfcausalimpact/blob/master/LICENSE) [](https://badge.fury.io/py/tfcausalimpact) [](https://pypi.python.org/pypi/tfcausalimpact)
Google's [Causal Impact](https://github.com/google/CausalImpact) Algorithm Implemented on Top of [TensorFlow Probability](https://github.com/tensorflow/probability).
## How It Works
The algorithm basically fits a [Bayesian structural](https://en.wikipedia.org/wiki/Bayesian_structural_time_series) model on past observed data to make predictions on what future data would look like. Past data comprises everything that happened before an intervention (which usually is the changing of a variable as being present or not, such as a marketing campaign that starts to run at a given point). It then compares the counter-factual (predicted) series against what was really observed in order to extract statistical conclusions.
Running the model is quite straightforward, it requires the observed data `y`, covariates `X` that helps the model through a linear regression, a `pre-period` interval that selects everything that happened before the intervention and a `post-period` with data after the "impact" happened.
Please refer to this medium [post](https://towardsdatascience.com/implementing-causal-impact-on-top-of-tensorflow-probability-c837ea18b126) for more on this subject.
## Installation
pip install tfcausalimpact
## Requirements
- python{3.7, 3.8, 3.9, 3.10, 3.11}
- matplotlib
- jinja2
- tensorflow>=2.10.0
- tensorflow_probability>=0.18.0
- pandas >= 1.3.5
## Getting Started
We recommend this [presentation](https://www.youtube.com/watch?v=GTgZfCltMm8) by Kay Brodersen (one of the creators of the Causal Impact in R).
We also created this introductory [ipython notebook](https://github.com/WillianFuks/tfcausalimpact/blob/master/notebooks/getting_started.ipynb) with examples of how to use this package.
This medium [article](https://towardsdatascience.com/implementing-causal-impact-on-top-of-tensorflow-probability-c837ea18b126) also offers some ideas and concepts behind the library.
### Example
Here's a simple example (which can also be found in the original Google's R implementation) running in Python:
```python
import pandas as pd
from causalimpact import CausalImpact
data = pd.read_csv('https://raw.githubusercontent.com/WillianFuks/tfcausalimpact/master/tests/fixtures/arma_data.csv')[['y', 'X']]
data.iloc[70:, 0] += 5
pre_period = [0, 69]
post_period = [70, 99]
ci = CausalImpact(data, pre_period, post_period)
print(ci.summary())
print(ci.summary(output='report'))
ci.plot()
```
Summary should look like this:
```
Posterior Inference {Causal Impact}
Average Cumulative
Actual 125.23 3756.86
Prediction (s.d.) 120.34 (0.31) 3610.28 (9.28)
95% CI [119.76, 120.97] [3592.67, 3629.06]
Absolute effect (s.d.) 4.89 (0.31) 146.58 (9.28)
95% CI [4.26, 5.47] [127.8, 164.19]
Relative effect (s.d.) 4.06% (0.26%) 4.06% (0.26%)
95% CI [3.54%, 4.55%] [3.54%, 4.55%]
Posterior tail-area probability p: 0.0
Posterior prob. of a causal effect: 100.0%
For more details run the command: print(impact.summary('report'))
```
And here's the plot graphic:
## Google R Package vs TensorFlow Python
Both packages should give equivalent results. Here's an example using the `comparison_data.csv` dataset available in the `fixtures` folder. When running CausalImpact in the original R package, this is the result:
### R
```{r}
data = read.csv.zoo('comparison_data.csv', header=TRUE)
pre.period <- c(as.Date("2019-04-16"), as.Date("2019-07-14"))
post.period <- c(as.Date("2019-07-15"), as.Date("2019-08-01"))
ci = CausalImpact(data, pre.period, post.period)
```
Summary results:
```
Posterior inference {CausalImpact}
Average Cumulative
Actual 78574 1414340
Prediction (s.d.) 79232 (736) 1426171 (13253)
95% CI [77743, 80651] [1399368, 1451711]
Absolute effect (s.d.) -657 (736) -11831 (13253)
95% CI [-2076, 832] [-37371, 14971]
Relative effect (s.d.) -0.83% (0.93%) -0.83% (0.93%)
95% CI [-2.6%, 1%] [-2.6%, 1%]
Posterior tail-area probability p: 0.20061
Posterior prob. of a causal effect: 80%
For more details, type: summary(impact, "report")
```
And correspondent plot:
### Python
```python
import pandas as pd
from causalimpact import CausalImpact
data = pd.read_csv('https://raw.githubusercontent.com/WillianFuks/tfcausalimpact/master/tests/fixtures/comparison_data.csv', index_col=['DATE'])
pre_period = ['2019-04-16', '2019-07-14']
post_period = ['2019-7-15', '2019-08-01']
ci = CausalImpact(data, pre_period, post_period, model_args={'fit_method': 'hmc'})
```
Summary is:
```
Posterior Inference {Causal Impact}
Average Cumulative
Actual 78574.42 1414339.5
Prediction (s.d.) 79282.92 (727.48) 1427092.62 (13094.72)
95% CI [77849.5, 80701.18][1401290.94, 1452621.31]
Absolute effect (s.d.) -708.51 (727.48) -12753.12 (13094.72)
95% CI [-2126.77, 724.92] [-38281.81, 13048.56]
Relative effect (s.d.) -0.89% (0.92%) -0.89% (0.92%)
95% CI [-2.68%, 0.91%] [-2.68%, 0.91%]
Posterior tail-area probability p: 0.16
Posterior prob. of a causal effect: 84.12%
For more details run the command: print(impact.summary('report'))
```
And plot:
Both results are equivalent.
## Performance
This package uses as default the [`Variational Inference`](https://en.wikipedia.org/wiki/Variational_Bayesian_methods) method from `TensorFlow Probability` which is faster and should work for the most part. Convergence can take somewhere between 2~3 minutes on more complex time series. You could also try running the package on top of GPUs to see if results improve.
If, on the other hand, precision is the top requirement when running causal impact analyzes, it's possible to switch algorithms by manipulating the input arguments like so:
```python
ci = CausalImpact(data, pre_period, post_period, model_args={'fit_method': 'hmc'})
```
This will make usage of the algorithm [`Hamiltonian Monte Carlo`](https://en.wikipedia.org/wiki/Hamiltonian_Monte_Carlo) which is State-of-the-Art for finding the Bayesian posterior of distributions. Still, keep in mind that on complex time series with thousands of data points and complex modeling involving various seasonal components this optimization can take 1 hour or even more to complete (on a GPU). Performance is sacrificed in exchange for better precision.
## Bugs & Issues
If you find bugs or have any issues while running this library please consider opening an [`Issue`](https://github.com/WillianFuks/tfcausalimpact/issues) with a complete description and reproductible environment so we can better help you solving the problem.