https://github.com/birdumbrella/nano-ID

Custom script collection for nanopore sequencing-based Isoform Dynamics (nano-ID), a method that detects newly synthesized RNA isoforms and monitors isoform metabolism. nano-ID combines metabolic RNA labeling, long-read nanopore sequencing of native RNA molecules and machine learning.
https://github.com/birdumbrella/nano-ID

Last synced: about 2 months ago
JSON representation

Custom script collection for nanopore sequencing-based Isoform Dynamics (nano-ID), a method that detects newly synthesized RNA isoforms and monitors isoform metabolism. nano-ID combines metabolic RNA labeling, long-read nanopore sequencing of native RNA molecules and machine learning.

• Host: GitHub
• URL: https://github.com/birdumbrella/nano-ID
• Owner: birdumbrella
• Created: 2020-01-29T14:16:16.000Z (over 4 years ago)
• Default Branch: master
• Last Pushed: 2021-01-13T11:03:45.000Z (over 3 years ago)
• Last Synced: 2023-10-20T01:54:49.688Z (9 months ago)
• Language: R
• Homepage:
• Size: 18.2 MB
• Stars: 2
• Watchers: 1
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

Lists

• awesome-nanopore - nano-ID - [R] - [Native molecule sequencing by nano-ID reveals synthesis and stability of RNA isoforms](https://genome.cshlp.org/content/30/9/1332.full). (Software packages / RNA modification analysis)

README

        
# nano-ID

Bespoke script collection for nanopore sequencing-based Isoform Dynamics (nano-ID), a method that detects newly synthesized RNA isoforms and monitors isoform metabolism. nano-ID combines metabolic RNA labeling, long-read nanopore sequencing of native RNA molecules and machine learning.