https://github.com/comprna/RATTLE

Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
https://github.com/comprna/RATTLE

bioinformatics clustering genomics nanopore rna-seq transcriptome

Last synced: about 2 months ago
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Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing

• Host: GitHub
• URL: https://github.com/comprna/RATTLE
• Owner: comprna
• License: gpl-3.0
• Created: 2018-07-13T14:09:34.000Z (almost 6 years ago)
• Default Branch: master
• Last Pushed: 2024-02-15T03:50:36.000Z (5 months ago)
• Last Synced: 2024-04-14T19:49:51.658Z (3 months ago)
• Topics: bioinformatics, clustering, genomics, nanopore, rna-seq, transcriptome
• Language: C++
• Homepage:
• Size: 83 MB
• Stars: 54
• Watchers: 8
• Forks: 9
• Open Issues: 17
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Lists

• awesome-nanopore - RATTLE - [C++] - [RATTLE: reference-free reconstruction and quantification of transcriptomes from Nanopore sequencing](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-022-02715-w) (Software packages / Transcript discovery and quantification)