https://github.com/scresawn/phamerator

a comparative genome browser for bacteriophages
https://github.com/scresawn/phamerator

Last synced: about 1 month ago
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a comparative genome browser for bacteriophages

• Host: GitHub
• URL: https://github.com/scresawn/phamerator
• Owner: scresawn
• License: gpl-3.0
• Created: 2016-05-17T15:22:36.000Z (about 8 years ago)
• Default Branch: master
• Last Pushed: 2023-02-23T19:06:11.000Z (over 1 year ago)
• Last Synced: 2024-02-16T04:34:34.780Z (5 months ago)
• Language: JavaScript
• Homepage: https://phamerator.org
• Size: 6.42 MB
• Stars: 17
• Watchers: 4
• Forks: 17
• Open Issues: 7
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Lists

• awesome-phages - [source

README

        
# Phamerator

This source code powers the [phamerator.org](https://phamerator.org) comparative bacteriophage genomics platform. The code is made available primarily for those who wish to help us with development. If you want to use Phamerator to analyze the public Actinobacteriophage genome data set, you can stop reading these instructions and just head over to [phamerator.org](https://phamerator.org). If instead you want to use Phamerator to study your own data set, you should know that [phamerator.org](https://phamerator.org) already hosts many data sets and can host yours too. Hosted data sets can be public, shared with a team of users, or reserved just for you. For help with adding your own data set(s), please get in touch with us. Contact information is available at [cresawnlab.org](https://cresawnlab.org). 

## For developers:

Install meteor by following the instructions at https://meteor.com

* `cd phamerator`

* `meteor`

Create a MongoDB index on the "Genomes" collection.

* With meteor running, open a new terminal in the phamerator subdirectory

* `meteor mongo`

* `use meteor`

* `db.genomes.createIndex({cluster:1});`

The names "Phamerator" and "Phamerator.org" are © Steven Cresawn, Ph.D. 2006-2020. All rights reserved. For more information regarding Phamerator's terms of use and other policies, visit [phamerator.org/terms](https://phamerator.org/terms).