https://github.com/bioinfologics/Pseudoseq.jl

Fake genomes, fake sequencing, real insights.
https://github.com/bioinfologics/Pseudoseq.jl

dna-assembly dna-sequences dna-sequencing genome-assembly linked-reads long-reads paired-end simulation simulator

Last synced: about 2 months ago
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Fake genomes, fake sequencing, real insights.

• Host: GitHub
• URL: https://github.com/bioinfologics/Pseudoseq.jl
• Owner: bioinfologics
• License: mit
• Created: 2018-12-04T14:55:06.000Z (over 5 years ago)
• Default Branch: master
• Last Pushed: 2021-09-04T07:02:33.000Z (almost 3 years ago)
• Last Synced: 2024-05-09T19:13:16.257Z (about 2 months ago)
• Topics: dna-assembly, dna-sequences, dna-sequencing, genome-assembly, linked-reads, long-reads, paired-end, simulation, simulator
• Language: Julia
• Homepage: https://bioinfologics.github.io/Pseudoseq.jl/dev
• Size: 7.25 MB
• Stars: 13
• Watchers: 4
• Forks: 3
• Open Issues: 3
• Metadata Files:
  • Readme: README.md
  • Changelog: CHANGELOG.md
  • License: LICENSE
  • Codeowners: .github/CODEOWNERS

Lists

• awesome-linked-reads - Pseudoseq - commit/bioinfologics/Pseudoseq.jl?label=%20) (Tools)

README

        
#  Pseudoseq

_Fake genomes, fake sequencing, **real** insights._

[![Latest Release](https://img.shields.io/github/release/bioinfologics/Pseudoseq.jl.svg)](https://github.com/bioinfologics/Pseudoseq.jl/releases/latest)

[![MIT license](https://img.shields.io/badge/license-MIT-green.svg)](https://github.com/bioinfologics/Pseudoseq.jl/blob/master/LICENSE)

[![Stable](https://img.shields.io/badge/docs-stable-blue.svg)](https://bioinfologics.github.io/Pseudoseq.jl/stable)

[![Latest](https://img.shields.io/badge/docs-dev-blue.svg)](https://bioinfologics.github.io/Pseudoseq.jl/dev)

[![Pkg Status](http://www.repostatus.org/badges/latest/active.svg)](http://www.repostatus.org/#active)

[![DOI](https://zenodo.org/badge/160373866.svg)](https://zenodo.org/badge/latestdoi/160373866)

## Description

The `Pseudoseq` package allows you to build arbitrary genomes, and simulate DNA

sequencing experiments.

DNA sequencing experiments are modelled conceptually as a sampling process.

## Install

You can install Pseudoseq from the julia REPL.

Press `]` to enter pkg mode again, and enter the following:

```julia

add Pseudoseq

```

## Testing

Pseudoseq is tested against Julia `1.X` on Linux, OS X, and Windows.