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https://github.com/deepomicslab/SpecHLA
SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes.
https://github.com/deepomicslab/SpecHLA
allelic-imbalance cancer genotype-frequency haplotype hla-sequence hla-typing human-leukocyte-antigens immunity local-assembly loh loss-of-heterozygosity nanopore pacbio-data phase reads-binning
Last synced: about 2 months ago
JSON representation
SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes.
- Host: GitHub
- URL: https://github.com/deepomicslab/SpecHLA
- Owner: deepomicslab
- License: mit
- Created: 2021-05-07T10:38:02.000Z (about 3 years ago)
- Default Branch: master
- Last Pushed: 2024-05-03T11:59:41.000Z (about 2 months ago)
- Last Synced: 2024-05-03T23:06:45.464Z (about 2 months ago)
- Topics: allelic-imbalance, cancer, genotype-frequency, haplotype, hla-sequence, hla-typing, human-leukocyte-antigens, immunity, local-assembly, loh, loss-of-heterozygosity, nanopore, pacbio-data, phase, reads-binning
- Language: C++
- Homepage:
- Size: 156 MB
- Stars: 22
- Watchers: 3
- Forks: 8
- Open Issues: 6
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Metadata Files:
- Readme: README.MD
- License: License
Lists
- awesome-linked-reads - SpecHLA - commit/deepomicslab/SpecHLA?label=%20) (Tools)