https://github.com/whatshap/whatshap

Read-based phasing of genomic variants, also called haplotype assembly
https://github.com/whatshap/whatshap

Last synced: about 2 months ago
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Read-based phasing of genomic variants, also called haplotype assembly

• Host: GitHub
• URL: https://github.com/whatshap/whatshap
• Owner: whatshap
• License: mit
• Created: 2020-07-02T14:53:00.000Z (almost 4 years ago)
• Default Branch: main
• Last Pushed: 2024-04-10T22:25:15.000Z (3 months ago)
• Last Synced: 2024-04-11T10:03:03.116Z (3 months ago)
• Language: C++
• Homepage: https://whatshap.readthedocs.io
• Size: 22.3 MB
• Stars: 300
• Watchers: 13
• Forks: 34
• Open Issues: 162
• Metadata Files:
  • Readme: README.md
  • Changelog: CHANGES.rst
  • License: LICENSE
  • Citation: CITATION.rst

Lists

• awesome-linked-reads - WhatsHap - based phasing of genomic variants, also called haplotype assembly. Implements several tools which work with linked reads| (Tools)

README

        
[![PyPI](https://img.shields.io/pypi/v/whatshap.svg)](https://pypi.python.org/pypi/whatshap)

![CI](https://github.com/whatshap/whatshap/workflows/CI/badge.svg)

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg)](http://bioconda.github.io/recipes/whatshap/README.html)

![WhatsHap logo](https://github.com/whatshap/whatshap/raw/main/logo/whatshap_logo.png)

WhatsHap is a software for phasing genomic variants using DNA sequencing

reads, also called *read-based phasing* or *haplotype assembly*. It is

especially suitable for long reads, but works also well with short reads.

For documentation and information on how to cite WhatsHap, please visit the [WhatsHap Homepage](https://whatshap.readthedocs.io/)