https://github.com/0h-n0/bioplot

https://github.com/0h-n0/bioplot

Last synced: about 2 months ago
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• Host: GitHub
• URL: https://github.com/0h-n0/bioplot
• Owner: 0h-n0
• Created: 2019-01-04T04:36:56.000Z (about 6 years ago)
• Default Branch: master
• Last Pushed: 2019-03-07T02:28:36.000Z (almost 6 years ago)
• Last Synced: 2024-11-09T09:49:09.940Z (3 months ago)
• Language: Python
• Size: 101 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# Bioplot

Biotplot aims to help to draw amnio acid sequences with your defined colors.

## Requirements

* matplotlib > 3.0.2

## how to install

```

$ pip install bioplot

```

## how to use

```python

import matplotlib.pyplot as plt

import numpy as np

fig = plt.figure()

ax = fig.add_subplot(111)

bplot = Bioplot(ax)

seq = "MEKEKKVKYFLRKSAFGLASVSAAFLVGSTVFAVDSPIEDTPIIRNGGELTNLLGNSETTLALRNEESATADLTAAAVADTVAAAAAENAGAAAWEAAAAADALAKAKADALKEFNKYGVSDYYKNLINNAKTVEGVKDLQAQVVESAKKARISEATDGLSDFLKSQTPAEDTVKSIELAEAKVLANRELDKYGVSDYHKNLINNAKTVEGVKDLQAQVVESAKKARISEATDGLSDFLKSQTPAEDTVKSIELAEAKVLANRELDKYGVSDYYKNLINNAKTVEGVKALIDEILAALPKTDTYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEKPEVIDASELTPAVTTYKLVINGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEKPEVIDASELTPAVTTYKLVINGKTLKGETTTKAVDAETAEKAFKQYANDNGVDGVWTYDDATKTFTVTEMVTEVPGDAPTEPEKPEASIPLVPLTPATPIAKDDAKKDDTKKEDAKKPEAKKEDAKKAETLPTTGEGSNPFFTAAALAVMAGAGALAVASKRKED"

colors = np.random.randn(len(seq))

bplot.aaplot2d(seq, colors=colors, max_width=20)

plt.savefig("example.png")

```

## sample

![sample](https://github.com/0h-n0/bioplot/raw/master/asset/example.png "sample")