https://github.com/0ncorhynchus/chip-lecture

https://github.com/0ncorhynchus/chip-lecture

Last synced: about 2 months ago
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• Host: GitHub
• URL: https://github.com/0ncorhynchus/chip-lecture
• Owner: 0ncorhynchus
• Created: 2015-05-26T05:49:25.000Z (over 9 years ago)
• Default Branch: master
• Last Pushed: 2015-05-26T05:49:45.000Z (over 9 years ago)
• Last Synced: 2024-10-21T22:53:22.503Z (3 months ago)
• Size: 17.5 MB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
## What Is?

Ubuntu(14.04trusty) container including some bioinformatics tools.

contains:

* SRA Toolkit 2.5.0

* Bowtie 1.1.1

* FastQC 0.11.3

* Samtools 1.2

* MACS2

## Build

```bash

$ sudo docker build -t chip-lecture .

```

## Usage

In your work directory

```{bash}

$ sudo docker run --rm -i -t -v `pwd`:/data chip-lecture

```