https://github.com/4ment/beaglepy

hms cutie beagle pie
https://github.com/4ment/beaglepy

beagle phylogenetics pybind11 python

Last synced: 4 days ago
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hms cutie beagle pie

• Host: GitHub
• URL: https://github.com/4ment/beaglepy
• Owner: 4ment
• License: gpl-3.0
• Created: 2020-09-01T11:08:11.000Z (over 4 years ago)
• Default Branch: master
• Last Pushed: 2023-04-13T23:35:59.000Z (over 1 year ago)
• Last Synced: 2024-11-07T04:10:55.588Z (about 2 months ago)
• Topics: beagle, phylogenetics, pybind11, python
• Language: C++
• Homepage:
• Size: 78.1 KB
• Stars: 1
• Watchers: 3
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# beaglepy: python binding for BEAGLE

[![Testing (Linux)](https://github.com/4ment/beaglepy/actions/workflows/test_linux.yml/badge.svg)](https://github.com/4ment/beaglepy/actions/workflows/test_linux.yml)

[![License](https://img.shields.io/github/license/4ment/beaglepy)](LICENCE)

beaglepy is a Python package for calculating phylogenetic likelihoods of sequence evolution.

Under the hood, beaglepy utilizes the high performance library [BEAGLE](https://github.com/beagle-dev/beagle-lib) and can therefore make use of highly-parallel processors such as those in graphics cards (GPUs) found in many PCs.

## Install

beaglepy can be installed on Linux or Mac (potentially on Windows), with the following prerequisites:

* [Python](https://www.python.org) 3.7 or newer

* [BEAGLE](https://github.com/beagle-dev/beagle-lib)

* [pybind11](https://github.com/pybind/pybind11) >= 2.5.0

* A compiler compatible with pybind11 (see [requirements](https://github.com/pybind/pybind11))