https://github.com/4ment/flc
Local clock model using relaxed and strict clocks
https://github.com/4ment/flc
bayesian beast2 mcmc phylogenetics
Last synced: about 1 year ago
JSON representation
Local clock model using relaxed and strict clocks
- Host: GitHub
- URL: https://github.com/4ment/flc
- Owner: 4ment
- License: gpl-3.0
- Created: 2017-06-19T04:18:47.000Z (almost 9 years ago)
- Default Branch: master
- Last Pushed: 2024-07-05T01:54:49.000Z (almost 2 years ago)
- Last Synced: 2025-03-25T08:22:32.667Z (about 1 year ago)
- Topics: bayesian, beast2, mcmc, phylogenetics
- Language: Java
- Size: 1.28 MB
- Stars: 2
- Watchers: 2
- Forks: 3
- Open Issues: 4
-
Metadata Files:
- Readme: README.md
- License: COPYING
Awesome Lists containing this project
README
# Flexible Local Clock model
A [BEAST2](http://beast2.org) package for relaxed clock models within local clock models
# Installing FLC
FLC is a package for BEAST 2, so it assumes you already have BEAST 2 installed. If you have not already done so, you can get BEAST 2 from [here](http://www.beast2.org).
There are two ways to install a package in BEAST2:
## The easy way (recommended) is to let BEAUTi install everything for you.
The BEAST2 website has a blog [post](https://www.beast2.org/managing-packages/) dedicated to this task. This package is not part of the official package repository so you need to register this package first.
- Open BEAUTi, click on `Manage Packages` menu the in the `File` menu. This will open a window showing the package names.
- Locate and select the package name `FLC` in the table and click the `Install/Upgrade` button.
- Close the window et voila the package should be installed.
## The hard way is to install manually the package:
To see where add-ons are installed launch BEAUTi, click the button with question mark in the dialog’s bottom right corner. A new dialog is shown with the information where you can find add-ons. Different operating systems have different locations where the add-ons are installed. [More info](https://www.beast2.org/managing-packages/).
Unzip the latest [release](https://github.com/4ment/flc/releases) in the add-on directory.
If you have multiple versions of BEAST and the add-on was installed with BEAUTi v2.5 the add-on will be only available for BEAST v2.5. Add-ons need to be installed for each version.