https://github.com/4ment/flc-data

https://github.com/4ment/flc-data

beast2 data simulations

Last synced: 7 days ago
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• Host: GitHub
• URL: https://github.com/4ment/flc-data
• Owner: 4ment
• Created: 2018-02-28T21:10:13.000Z (almost 7 years ago)
• Default Branch: master
• Last Pushed: 2018-03-01T03:52:19.000Z (almost 7 years ago)
• Last Synced: 2024-11-07T04:11:42.462Z (about 2 months ago)
• Topics: beast2, data, simulations
• Language: Python
• Size: 19.5 KB
• Stars: 0
• Watchers: 3
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# Flexible local clocks

This repository contains the data sets supporting the results of the following article:

Fourment M & Darling AE. Local and relaxed clocks, the best of both worlds.

# Requirements

## The FLC package [FLC](https://github.com/4ment/flc)

## [physher](https://github.com/4ment/physher)

The python script needs `simultron` to simulate nucleotide alignments. Download and compile [v1.0.2](https://github.com/4ment/physher/releases/tag/v1.0.2) only.

## [BEAST2](https://www.beast2.org)

The python script needs `beast` and `treeannotator`.

## Python 

# Running the simulations

``` shell

python run_simulations.py

```