https://github.com/4ment/seqotron

Alignment editor for Mac OS X
https://github.com/4ment/seqotron

macosx phylogenetics sequence-viewer tree-viewer

Last synced: about 1 year ago
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Alignment editor for Mac OS X

• Host: GitHub
• URL: https://github.com/4ment/seqotron
• Owner: 4ment
• License: gpl-3.0
• Created: 2015-05-18T07:08:17.000Z (about 11 years ago)
• Default Branch: master
• Last Pushed: 2017-08-01T00:57:07.000Z (almost 9 years ago)
• Last Synced: 2025-03-25T08:22:32.538Z (about 1 year ago)
• Topics: macosx, phylogenetics, sequence-viewer, tree-viewer
• Language: Objective-C
• Homepage:
• Size: 656 KB
• Stars: 28
• Watchers: 7
• Forks: 4
• Open Issues: 3
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Awesome Lists containing this project

• awesome-genome-visualization - seqotron - genome-visualization/seqotron.png) (MSA)

README

          
seqotron

=======

[![Build Status](https://travis-ci.org/4ment/seqotron.svg?branch=master)](https://travis-ci.org/4ment/seqotron)

![Sequence viewer](http://mateo.fourment.free.fr/software/seqotron/seqotron-screenshot.png "Seqotron sequence viewer")

Seqotron is a user-friendly sequence editor. It is written in Objective-C/Cocoa and runs on Mac OS X.

## Features

* Visualisation and manual editing of nucleotide and amino acid sequences.

* Alignment through [MUSCLE](http://www.drive5.com/muscle) and [MAFFT](http://mafft.cbrc.jp).

* Phylogenetic tree inference with [Physher](http://github.com/4ment/physher).

* Open source under [GNU GPL](http://www.gnu.org/copyleft/gpl.html).

## Getting started

[Download Seqotron binaries](https://github.com/4ment/seqotron/releases)

[A quick overview of Seqotron](https://github.com/4ment/seqotron/wiki)

[User manual [PDF]](https://www.dropbox.com/s/6gvt0l4gmfwggpe/seqotron-manual.pdf)

## Reference

[Mathieu Fourment and Edward C. Holmes. Seqotron: a user-friendly sequence editor for Mac OS X. *BMC Res Notes*, 2016, 17;9(1):106](http://dx.doi.org/10.1186/s13104-016-1927-4)