https://github.com/Adrian-Cantu/PhANNs

https://github.com/Adrian-Cantu/PhANNs

Last synced: 3 months ago
JSON representation

• Host: GitHub
• URL: https://github.com/Adrian-Cantu/PhANNs
• Owner: Adrian-Cantu
• License: mit
• Created: 2019-08-19T19:07:03.000Z (about 5 years ago)
• Default Branch: master
• Last Pushed: 2022-11-17T17:30:12.000Z (almost 2 years ago)
• Last Synced: 2024-05-30T07:03:10.440Z (5 months ago)
• Language: Python
• Size: 25.7 MB
• Stars: 18
• Watchers: 3
• Forks: 5
• Open Issues: 8
• Metadata Files:
  • Readme: README.md
  • License: LICENSE
  • Citation: CITATION.md

Awesome Lists containing this project

• awesome-phages - Phanns - PhANNs is a tool to classify any phage ORF as one of 10 (Annotation / Gene prediction-annotation)

README

        
# PhANNs

PhANNs is a tool to classify any phage ORF as one of 10 structural protein class, or as "others". It uses an ensemble of Artificial Neural Networks.

## Quick start

The easiest way to run PhANNs it to use the [Web server.](https://phanns.com/)

## Repository

The repository is divided in two parts. The ["web\_server"](https://github.com/Adrian-Cantu/PhANNs/tree/master/web_server) directory contains all you need to run PhANNs locally. The ["model\_training"](https://github.com/Adrian-Cantu/PhANNs/tree/master/model_training) directory contains the code to download sequences and to train and test the Artificial Neural Networks.

## Paper

PhANNs paper is available [here](https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007845).

## Cite

Please cite as

```

Cantu, V.A., Salamon, P., Seguritan, V., Redfield, J., Salamon, D., Edwards, R.A., and Segall, A.M. (2020). PhANNs, a fast and accurate tool and web server to classify phage structural proteins. PLOS Computational Biology 16, e1007845. 10.1371/journal.pcbi.1007845.

```