https://github.com/Appsilon/shiny.gosling

R Shiny wrapper for Gosling.js - Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization
https://github.com/Appsilon/shiny.gosling

bioconductor genomics-visualization r shiny

Last synced: 3 months ago
JSON representation

R Shiny wrapper for Gosling.js - Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization

• Host: GitHub
• URL: https://github.com/Appsilon/shiny.gosling
• Owner: Appsilon
• Created: 2022-07-20T09:04:54.000Z (over 2 years ago)
• Default Branch: main
• Last Pushed: 2024-06-05T14:19:28.000Z (5 months ago)
• Last Synced: 2024-06-05T16:27:10.947Z (5 months ago)
• Topics: bioconductor, genomics-visualization, r, shiny
• Language: R
• Homepage: https://appsilon.github.io/shiny.gosling/
• Size: 13.7 MB
• Stars: 16
• Watchers: 16
• Forks: 1
• Open Issues: 23
• Metadata Files:
  • Readme: README.md

Awesome Lists containing this project

• awesome-shiny-extensions - shiny.gosling - Shiny wrapper for Gosling.js, grammar-based toolkit for scalable and interactive genomics data visualization. (Visualization / Biological Data)

README

        
# shiny.gosling 

> _R Shiny wrapper for Gosling.js - Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization_

[![in Bioc](https://bioconductor.org/shields/years-in-bioc/shiny.gosling.svg)](https://bioconductor.org/packages/release/bioc/html/shiny.gosling.html#since)

[![BiocCheck](https://github.com/Appsilon/shiny.gosling/actions/workflows/bioc-check.yml/badge.svg)](https://github.com/Appsilon/shiny.gosling/actions/workflows/bioc-check.yml)

[![R-CMD-checks](https://github.com/Appsilon/shiny.gosling/actions/workflows/r-cmd-check.yml/badge.svg)](https://github.com/Appsilon/shiny.gosling/actions/workflows/r-cmd-check.yml)

Based on [gosling.js](http://gosling-lang.org/) and powered by [shiny.react](https://appsilon.github.io/shiny.react/).

## Getting started

To install the packages, run:

```R

if (!require("BiocManager", quietly = TRUE))

    install.packages("BiocManager")

BiocManager::install("shiny.gosling")

```

Take a look at [basic example app](https://github.com/Appsilon/shiny.gosling/blob/main/inst/examples/staticCircularBar/app.R) to start working with _shiny.gosling_.

To learn about the Gosling language, follow [Gosling docs](http://gosling-lang.org/tutorials/).

## Examples

Use the `run_example` function in order to see the working examples:

For example to run the *multiTrackApp* example:

```R

run_example("multiTrackApp")

```

Here is a preview of what's there:

### Simple Single Track Shiny App

![Simple Single Track Shiny App](https://github.com/Appsilon/shiny.gosling.js/raw/main/examples/singleTrackShiny.gif)

### Interactive Circular Plot with Linear Brush

![Circular Plot with Linear Brush](https://github.com/Appsilon/shiny.gosling.js/raw/70efce34abe21adf11ac1312de5673e219e62b73/examples/circularLinearBrush.gif)

### SARS CoV 2 Example

![SARS CoV 2 Example](https://github.com/Appsilon/shiny.gosling.js/raw/main/examples/sarsCov2.gif)

## Appsilon



Appsilon is a **Posit (formerly RStudio) Full Service Certified Partner**.


Learn more at [appsilon.com](https://appsilon.com).

Get in touch [[email protected]](mailto:[email protected])

Explore the [Rhinoverse](https://rhinoverse.dev) - a family of R packages built around [Rhino](https://appsilon.github.io/rhino/)!