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https://github.com/BIOP/ijp-imagetoatlas

ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
https://github.com/BIOP/ijp-imagetoatlas

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ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)

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# Aligning Big Brains & Atlases

ImageJ/Fiji plugin that align images with the Allen Brain Atlas within Fiji.

Documentation: [https://abba-documentation.readthedocs.io](https://abba-documentation.readthedocs.io/en/latest/)

This repository is the core Java package that runs ABBA on the ImageJ/Fiji side. There are associated repositories:
- [Documentation](https://github.com/BIOP/abba-documentation)
- [QuPath extension](https://github.com/BIOP/qupath-extension-abba)
- [Python wrapper](https://github.com/BIOP/abba_python)
- [Windows installer generator](https://github.com/BIOP/abba-installer)
- [BraiAn - **Brai**n **An**alysis for post-registration analysis](https://silvalab.codeberg.page/BraiAn/)