https://github.com/BIOP/ijp-imagetoatlas

ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
https://github.com/BIOP/ijp-imagetoatlas

Last synced: 2 months ago
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ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)

• Host: GitHub
• URL: https://github.com/BIOP/ijp-imagetoatlas
• Owner: BIOP
• Created: 2019-03-05T13:47:02.000Z (about 6 years ago)
• Default Branch: master
• Last Pushed: 2025-01-27T16:31:06.000Z (3 months ago)
• Last Synced: 2025-01-27T16:40:55.958Z (3 months ago)
• Language: Java
• Homepage: https://abba-documentation.readthedocs.io/en/latest/
• Size: 69.8 MB
• Stars: 49
• Watchers: 7
• Forks: 8
• Open Issues: 34
• Metadata Files:
  • Readme: README.md

Awesome Lists containing this project

• awesome-scientific-image-analysis - ABBA - Aligning Big Brains and Atlases. (📐 Image registration / Software tools)
• awesome-scientific-image-analysis - ABBA

README

        
[![](https://github.com/BIOP/ijp-imagetoatlas/actions/workflows/build-main.yml/badge.svg)](https://github.com/BIOP/ijp-imagetoatlas/actions/workflows/build-main.yml)

[![](https://readthedocs.org/projects/abba-documentation/badge/?version=latest)](https://abba-documentation.readthedocs.io/en/latest/)

[![Windows installer Version](https://img.shields.io/github/v/release/BIOP/ijp-imagetoatlas?label=Version-[Windows%20installer])](https://github.com/BIOP/ijp-imagetoatlas/releases)

[![PyPI Version](https://img.shields.io/pypi/v/abba_python.svg?label=Version-[PyPI])](https://pypi.python.org/pypi/abba_python)

[![Maven Scijava Version](https://img.shields.io/github/v/tag/BIOP/ijp-imagetoatlas?label=Version-[Maven%20Scijava])](https://maven.scijava.org/#nexus-search;quick~imagetoatlasregister)

# Aligning Big Brains & Atlases

ImageJ/Fiji plugin that align images with the Allen Brain Atlas within Fiji.

Documentation: [https://abba-documentation.readthedocs.io](https://abba-documentation.readthedocs.io/en/latest/)

This repository is the core Java package that runs ABBA on the ImageJ/Fiji side. There are associated repositories:

- [Documentation](https://github.com/BIOP/abba-documentation)

- [QuPath extension](https://github.com/BIOP/qupath-extension-abba)

- [Python wrapper](https://github.com/BIOP/abba_python)

- [Windows installer generator](https://github.com/BIOP/abba-installer)

- [BraiAn - **Brai**n **An**alysis for post-registration analysis](https://silvalab.codeberg.page/BraiAn/)