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https://github.com/BIOP/ijp-imagetoatlas
ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
https://github.com/BIOP/ijp-imagetoatlas
Last synced: about 9 hours ago
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ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
- Host: GitHub
- URL: https://github.com/BIOP/ijp-imagetoatlas
- Owner: BIOP
- Created: 2019-03-05T13:47:02.000Z (almost 6 years ago)
- Default Branch: master
- Last Pushed: 2025-01-27T16:31:06.000Z (15 days ago)
- Last Synced: 2025-01-27T16:40:55.958Z (15 days ago)
- Language: Java
- Homepage: https://abba-documentation.readthedocs.io/en/latest/
- Size: 69.8 MB
- Stars: 49
- Watchers: 7
- Forks: 8
- Open Issues: 34
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Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
[![](https://github.com/BIOP/ijp-imagetoatlas/actions/workflows/build-main.yml/badge.svg)](https://github.com/BIOP/ijp-imagetoatlas/actions/workflows/build-main.yml)
[![](https://readthedocs.org/projects/abba-documentation/badge/?version=latest)](https://abba-documentation.readthedocs.io/en/latest/)
[![Windows installer Version](https://img.shields.io/github/v/release/BIOP/ijp-imagetoatlas?label=Version-[Windows%20installer])](https://github.com/BIOP/ijp-imagetoatlas/releases)
[![PyPI Version](https://img.shields.io/pypi/v/abba_python.svg?label=Version-[PyPI])](https://pypi.python.org/pypi/abba_python)
[![Maven Scijava Version](https://img.shields.io/github/v/tag/BIOP/ijp-imagetoatlas?label=Version-[Maven%20Scijava])](https://maven.scijava.org/#nexus-search;quick~imagetoatlasregister)# Aligning Big Brains & Atlases
ImageJ/Fiji plugin that align images with the Allen Brain Atlas within Fiji.
Documentation: [https://abba-documentation.readthedocs.io](https://abba-documentation.readthedocs.io/en/latest/)
This repository is the core Java package that runs ABBA on the ImageJ/Fiji side. There are associated repositories:
- [Documentation](https://github.com/BIOP/abba-documentation)
- [QuPath extension](https://github.com/BIOP/qupath-extension-abba)
- [Python wrapper](https://github.com/BIOP/abba_python)
- [Windows installer generator](https://github.com/BIOP/abba-installer)
- [BraiAn - **Brai**n **An**alysis for post-registration analysis](https://silvalab.codeberg.page/BraiAn/)