https://github.com/BioContainers/mulled

Mulled - Automatized Containerized Software Repository
https://github.com/BioContainers/mulled

bioinformatics docker involucro mulled rkt

Last synced: 3 months ago
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Mulled - Automatized Containerized Software Repository

• Host: GitHub
• URL: https://github.com/BioContainers/mulled
• Owner: BioContainers
• Created: 2016-01-15T21:04:07.000Z (almost 9 years ago)
• Default Branch: master
• Last Pushed: 2024-03-18T10:51:59.000Z (8 months ago)
• Last Synced: 2024-06-17T18:03:14.412Z (5 months ago)
• Topics: bioinformatics, docker, involucro, mulled, rkt
• Homepage:
• Size: 2.7 MB
• Stars: 62
• Watchers: 9
• Forks: 35
• Open Issues: 16
• Metadata Files:
  • Readme: README.md
  • Contributing: .github/CONTRIBUTING.md
  • Code of conduct: CODE_OF_CONDUCT.md

Awesome Lists containing this project

• awesome-starred - BioContainers/mulled - Mulled - Automatized Containerized Software Repository (docker)

README

        
[![Gitter](https://badges.gitter.im/mulled/mulled.svg)](https://gitter.im/mulled/mulled?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge) [![Build Status](https://travis-ci.org/mulled/mulled.svg?branch=master)](https://travis-ci.org/mulled/mulled)

# Mulled - Containerized Software Repository

You need to have a very slim [Docker](https://www.docker.com/) or [rkt](https://coreos.com/rkt/) Container of your favorite tool?

Your tool is already available in conda, alpine or linuxbrew?

Fantastic! This project will generate a minimal Container either for [Docker](https://www.docker.com/) or [rkt](https://coreos.com/rkt/) and all what you need to do is to write one single line in [packages.tsv](https://github.com/mulled/mulled/blob/master/packages.tsv).

Try it and build containers with us!

# How to build your own container

  1. Open the file [packages.tsv](https://github.com/mulled/mulled/blob/master/packages.tsv) in edit mode

  2. Insert a new line describing your package you want to containerizing

    * First column is the name of your package manager [conda, linuxbrew, alpine]

    * Second column is the package name (e.g. samtools)

    * Third column is the package version (e.g. 1.3--1). The version format depends on your package manager please have a look at other examples to get it right.

    * Please ensure you are using TABS not spaces to separate columns

  3. Create a Pull Request and wait until our testing passes

  4. You are done. We will merge your PR as early as possible or you can apply to get commit access by asking on [gitter](https://gitter.im/mulled/mulled?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge)

## Underlying technology

The layer donning technology underlying the mulled project is developed in the [involucro](https://github.com/involucro/involucro) project. If you want to contribute, for example to add an `dpkg` or `yum` backend please contact us and check out the [involucro](https://github.com/involucro/involucro) project.

## Conceptual Overview

![Flowchar](pictures/mulledflow.png)