https://github.com/Cibiv/NextGenMap

NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms while still outperforming them in terms of runtime. This allows analysing large scale datasets even with increased SNP rates or higher error rates (e.g. caused by specialized experimental protocols) and avoids biases caused by highly variable regions in the genome.
https://github.com/Cibiv/NextGenMap

c-plus-plus-11 next-generation-sequencing opencl short-read-mapper

Last synced: about 1 month ago
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NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms while still outperforming them in terms of runtime. This allows analysing large scale datasets even with increased SNP rates or higher error rates (e.g. caused by specialized experimental protocols) and avoids biases caused by highly variable regions in the genome.

• Host: GitHub
• URL: https://github.com/Cibiv/NextGenMap
• Owner: Cibiv
• License: other
• Created: 2012-08-08T07:35:44.000Z (over 12 years ago)
• Default Branch: master
• Last Pushed: 2019-05-15T09:05:21.000Z (over 5 years ago)
• Last Synced: 2024-08-03T01:11:53.684Z (5 months ago)
• Topics: c-plus-plus-11, next-generation-sequencing, opencl, short-read-mapper
• Language: C++
• Homepage:
• Size: 113 MB
• Stars: 85
• Watchers: 12
• Forks: 9
• Open Issues: 25
• Metadata Files:
  • Readme: README
  • License: LICENSE

Awesome Lists containing this project

• AwesomeGenomics - NextGenMap

README

        
Please see our github wiki for more information (https://github.com/Cibiv/NextGenMap/wiki)