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https://github.com/Coolgenome/iTALK
https://github.com/Coolgenome/iTALK
Last synced: 1 day ago
JSON representation
- Host: GitHub
- URL: https://github.com/Coolgenome/iTALK
- Owner: Coolgenome
- Created: 2018-12-12T15:00:08.000Z (almost 6 years ago)
- Default Branch: master
- Last Pushed: 2019-08-02T19:19:39.000Z (over 5 years ago)
- Last Synced: 2024-08-03T14:07:01.129Z (3 months ago)
- Language: R
- Size: 2.04 MB
- Stars: 55
- Watchers: 4
- Forks: 20
- Open Issues: 32
-
Metadata Files:
- Readme: README.md
Awesome Lists containing this project
- awesome-cell-cell-communication - iTALK - [R]- iTALK is an R toolkit for characterizing and illustrating intercellular communication. (Uncategorized / Uncategorized)
README
# iTALK
`iTALK` is an R toolkit for characterizing and illustrating intercellular communication, developed and maintained by [Linghua Wang lab](https://www.mdanderson.org/research/departments-labs-institutes/labs/linghua-wang-laboratory.html) at the University of Texas MD Anderson Cancer Center. `iTALK` can be used to visualize the complexity, diversity and dynamics of cell-cell communication in a wide range of biological processes. For more information, please refer to [our manuscript](https://www.biorxiv.org/content/early/2019/01/04/507871).
# Installation
To install the developmental version from GitHub:
```R
if(!require(devtools)) install.packages("devtools");
devtools::install_github("Coolgenome/iTALK", build_vignettes = TRUE)
```
To load the installed `iTALK` in R:
```R
library(iTALK)
```
# Citation
This package is intended for research use only. For any bugs, enhancement requests and other issues, please use the [`iTALK` GitHub issues tracker](https://github.com/Coolgenome/iTALk/issues) or email [Yuanxin Wang](mailto:[email protected]). If you find iTALK useful and use iTALK in your publication, please cite the paper: [iTALK: an R Package to Characterize and Illustrate Intercellular Communication](https://www.biorxiv.org/content/early/2019/01/04/507871)