https://github.com/EPFL-Center-for-Imaging/napari-ortho-plotter
Interactively plot the image intensity along the depth axis of a 3D image dataset.
https://github.com/EPFL-Center-for-Imaging/napari-ortho-plotter
napari-plugin
Last synced: 7 months ago
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Interactively plot the image intensity along the depth axis of a 3D image dataset.
- Host: GitHub
- URL: https://github.com/EPFL-Center-for-Imaging/napari-ortho-plotter
- Owner: EPFL-Center-for-Imaging
- License: bsd-3-clause
- Created: 2023-10-19T20:07:20.000Z (almost 3 years ago)
- Default Branch: main
- Last Pushed: 2024-05-24T07:53:30.000Z (about 2 years ago)
- Last Synced: 2025-02-15T03:34:56.708Z (over 1 year ago)
- Topics: napari-plugin
- Language: Python
- Homepage:
- Size: 2.61 MB
- Stars: 1
- Watchers: 1
- Forks: 1
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# napari-z-plotter
In 2D view, click on an pixel to plot the intensity along the depth (Z) axis of a 3D image at that location.
This project is part of an ongoing collaboration between the [EPFL Center for Imaging](https://imaging.epfl.ch/) and the [Bionanophotonic Systems Laboratory](https://www.epfl.ch/labs/bios/).
**Authors**
- Mallory Wittwer (EPFL Center for Imaging)
- Felix Richter (BIOS)
## Installation
You can install `napari-z-plotter` via [pip]:
pip install napari-z-plotter
## Usage
Select the plugin from the `Plugins` menu of Napari.
## Contributing
Contributions are very welcome. Please get in touch if you'd like to be involved in improving or extending the package.
## License
Distributed under the terms of the [BSD-3] license,
"napari-z-plotter" is free and open source software
## Issues
If you encounter any problems, please file an issue along with a detailed description.
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This [napari] plugin was generated with [Cookiecutter] using [@napari]'s [cookiecutter-napari-plugin] template.
[napari]: https://github.com/napari/napari
[Cookiecutter]: https://github.com/audreyr/cookiecutter
[@napari]: https://github.com/napari
[MIT]: http://opensource.org/licenses/MIT
[BSD-3]: http://opensource.org/licenses/BSD-3-Clause
[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt
[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt
[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0
[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt
[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin
[napari]: https://github.com/napari/napari
[tox]: https://tox.readthedocs.io/en/latest/
[pip]: https://pypi.org/project/pip/
[PyPI]: https://pypi.org/