https://github.com/Health-Informatics-UoN/carrot-mapper

Streamlined Data Mapping to OMOP
https://github.com/Health-Informatics-UoN/carrot-mapper

django health health-data nextjs omop omop-cdm

Last synced: 6 months ago
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Streamlined Data Mapping to OMOP

• Host: GitHub
• URL: https://github.com/Health-Informatics-UoN/carrot-mapper
• Owner: Health-Informatics-UoN
• License: mit
• Created: 2020-12-03T10:23:13.000Z (over 5 years ago)
• Default Branch: main
• Last Pushed: 2026-01-13T20:32:49.000Z (6 months ago)
• Last Synced: 2026-01-13T21:36:51.467Z (6 months ago)
• Topics: django, health, health-data, nextjs, omop, omop-cdm
• Language: Python
• Homepage: https://carrot.ac.uk
• Size: 15.9 MB
• Stars: 19
• Watchers: 5
• Forks: 6
• Open Issues: 47
• Metadata Files:
  • Readme: README.md
  • Contributing: CONTRIBUTING.md
  • License: LICENSE
  • Codeowners: .github/CODEOWNERS
  • Zenodo: .zenodo.json

Awesome Lists containing this project

• awesome-ohdsi - carrot-mapper - Streamlined data mapping to OMOP. (ETL & Data Transformation / Database Connectivity)

README

          


  

  

    

    

  

  







  





  





  







  

  
Streamlined Data Mapping to OMOP




  Carrot Mapper automates vocabulary mapping and enables the reuse of mapping rules across datasets, offering advanced features to simplify OMOP data standardization tasks.


  





  


  Explore the docs »

  





Carrot Mapper is a webapp which allows the user to use the metadata (as output by [WhiteRabbit](https://github.com/OHDSI/WhiteRabbit)) from a dataset to produce mapping rules to the OMOP standard, in the JSON format. These can be ingested by [Carrot Transform](https://github.com/Health-Informatics-UoN/carrot-transform) to perform the mapping of the contents of the dataset to OMOP.

Carrot Mapper provides automated mapping from a selection of vocabularies, reuse of mapping rules across datasets, and manual mapping rule generation. It also provides a number of helpful features to support and encourage standardised mappings across datasets.

## Quick Start for Developers

To have the project up and running, please follow the [Quick Start Guide](https://health-informatics-uon.github.io/carrot/mapper/dev_guide/quickstart).

## License

This repository's source code is available under the [MIT license](LICENSE).