https://github.com/IHCC-cohorts/GECKO

Genomics Cohorts Knowledge Ontology
https://github.com/IHCC-cohorts/GECKO

cohort genomics obofoundry ontology

Last synced: 2 months ago
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Genomics Cohorts Knowledge Ontology

• Host: GitHub
• URL: https://github.com/IHCC-cohorts/GECKO
• Owner: IHCC-cohorts
• License: other
• Created: 2020-05-29T13:31:09.000Z (over 4 years ago)
• Default Branch: master
• Last Pushed: 2021-01-20T16:02:30.000Z (almost 4 years ago)
• Last Synced: 2023-12-19T15:36:19.579Z (about 1 year ago)
• Topics: cohort, genomics, obofoundry, ontology
• Language: Makefile
• Homepage:
• Size: 903 KB
• Stars: 7
• Watchers: 5
• Forks: 3
• Open Issues: 10
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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# Genomics Cohorts Knowledge Ontology

**NOTE:** This is work in progress.

An ontology to represent genomics cohort attributes. The GECKO is maintained by the CINECA project, https://www.cineca-project.eu, and standardises attributes commonly used for genomics cohort description as well as individual-level data items. A series of tools is being developed to enable automated generation of harmonised data files based on a JSON schema mapping file. For more information please contact [email protected]

GECKO currently has two products:

* `gecko.owl`: the OBO version of GECKO

* `views/ihcc-gecko.owl`: a view developed for [International HundredK+ Cohorts Consortium](https://ihccglobal.org/)

While the OBO view of GECKO conforms to OBO priniciples and reuses classes from upper-level ontologies such as [BFO](http://purl.obolibrary.org/obo/bfo.owl), the IHCC view rearranges the core GECKO terms (including some imported, lower-level terms) and groups them into 5 categories. The labels in the IHCC view are not the `rdfs:label` from the OBO version, but come from the "IHCC browser label" annotation property.

![IHCC GECKO View](https://github.com/IHCC-cohorts/GECKO/blob/master/views/ihcc-gecko.jpg)

## © 2020 EMBL-EBI

Distributed under the [Creative Commons Attribution 4.0 International (CC BY 4.0) License](https://creativecommons.org/licenses/by/4.0/).

The GECKO logo was designed by Spencer Phillips - EMBL-EBI, 2021.