https://github.com/Marlin-Na/TnT

Interactive visulizations for track-based genomic data in R
https://github.com/Marlin-Na/TnT

bioconductor genome-browser htmlwidgets r shiny

Last synced: 3 months ago
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Interactive visulizations for track-based genomic data in R

• Host: GitHub
• URL: https://github.com/Marlin-Na/TnT
• Owner: Marlin-Na
• Created: 2017-01-16T19:33:58.000Z (almost 8 years ago)
• Default Branch: master
• Last Pushed: 2020-01-30T07:09:01.000Z (almost 5 years ago)
• Last Synced: 2024-07-09T08:20:40.278Z (4 months ago)
• Topics: bioconductor, genome-browser, htmlwidgets, r, shiny
• Language: R
• Homepage: https://tnt.marlin.pub/articles/introduction
• Size: 10.3 MB
• Stars: 14
• Watchers: 3
• Forks: 3
• Open Issues: 5
• Metadata Files:
  • Readme: README.md

Awesome Lists containing this project

• awesome-shiny-extensions - TnT - Track-based visulizations based on the TnT JavaScript libraries. Useful for displaying genomic features as a simple genome browser. (Visualization / Biological Data)

README

        


# TnT

[![Bioc](http://www.bioconductor.org/shields/years-in-bioc/TnT.svg)](https://www.bioconductor.org/packages/devel/bioc/html/TnT.html#since)

[![Travis-CI Build Status](https://travis-ci.org/Marlin-Na/TnT.svg?branch=master)](https://travis-ci.org/Marlin-Na/TnT)

[![Bioconductor Release](https://www.bioconductor.org/shields/build/release/bioc/TnT.svg)](http://bioconductor.org/checkResults/release/bioc-LATEST/TnT/)

[![Bioconductor Devel](https://www.bioconductor.org/shields/build/devel/bioc/TnT.svg)](http://bioconductor.org/checkResults/devel/bioc-LATEST/TnT/)

TnT is a R package that wraps the [TnT javascript libraries](https://github.com/tntvis)

to provide track-based visulizations from R.

It is useful for displaying genomic features as a simple genome browser, particularly

when working with relevant Bioconductor packages.

To install the stable version from biocondcutor, use

```R

if (!requireNamespace("BiocManager", quietly=TRUE))

    install.packages("BiocManager")

BiocManager::install("TnT")

```

Or alternatively, install the latest version from github with

```R

devtools::install_github("Marlin-Na/TnT")

```

To get started, checkout:

- The package vignette [Introduction to TnT](https://tnt.marlin.pub/articles/introduction.html)

- [Examples](https://tnt.marlin.pub/articles/examples) of different track types.

You can also find the [package](http://bioconductor.org/packages/release/bioc/html/TnT.html)

on Bioconductor.

### GSoC 2017

This R package was a Google Summer of Code project in 2017, kindly mentored by

Toby Dylan Hocking and Miguel Pignatelli, under the organization of R project

for statistical computing.

Please see:

- [The project link](https://summerofcode.withgoogle.com/dashboard/project/5521605556961280/overview/)

- [Wiki](https://github.com/rstats-gsoc/gsoc2017/wiki/Interactive-Genome-Browser-in-R) of the project idea

- [My blog post](http://weblog.marlin.pub/post/tnt/tnt-gsoc17/) as a summary of the project.