Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
https://github.com/MindTheGap-ERC/admtools
Estimate Age-Depth Models and Transform Data
https://github.com/MindTheGap-ERC/admtools
age-depth-model geochronology sedimentology stratigraphy
Last synced: 20 days ago
JSON representation
Estimate Age-Depth Models and Transform Data
- Host: GitHub
- URL: https://github.com/MindTheGap-ERC/admtools
- Owner: MindTheGap-ERC
- License: gpl-3.0
- Created: 2023-02-11T16:05:19.000Z (almost 2 years ago)
- Default Branch: main
- Last Pushed: 2024-09-12T05:59:26.000Z (3 months ago)
- Last Synced: 2024-09-12T18:12:10.396Z (3 months ago)
- Topics: age-depth-model, geochronology, sedimentology, stratigraphy
- Language: R
- Homepage: https://mindthegap-erc.github.io/admtools/
- Size: 13.4 MB
- Stars: 3
- Watchers: 2
- Forks: 0
- Open Issues: 3
-
Metadata Files:
- Readme: README.md
- Changelog: NEWS.md
- Contributing: CONTRIBUTING.md
- License: LICENSE
- Citation: CITATION.cff
Awesome Lists containing this project
- awesome-utrecht-university - admtools - R package to transform data using age-depth models (Projects / Research software)
- awesome-utrecht-university - admtools - R package to transform data using age-depth models (Projects / Research software)
README
# admtools
R package to estimate age-depth models from stratigraphic and sedimentological data, and transform complex data between the time and stratigraphic domain.
[](https://github.com/MindTheGap-ERC/admtools/actions/workflows/R-CMD-check.yaml)
[](https://fair-software.eu)
[](https://cran.r-project.org/package=admtools)
[](https://doi.org/10.5281/zenodo.13888709)
## Authors
__Niklas Hohmann__
Utrecht University
email: n.h.hohmann [at] uu.nl
Web page: [uu.nl/staff/NHohmann](https://www.uu.nl/staff/NHHohmann)
Orcid: [0000-0003-1559-1838](https://orcid.org/0000-0003-1559-1838)
## Installation
You can install the package from _CRAN_. For this, run
```R
install.packages("admtools")
```
in R. To install the package from _GitHub_, first install the _remotes_ package
```R
install.packages("remotes")
```
Then, run
```R
remotes::install_github(repo = "MindTheGap-ERC/admtools",
build_vignettes = TRUE,
ref = "HEAD",
dependencies = TRUE)
```
To install the latest stable version. To install the version under development, use
```R
remotes::install_github(repo = "MindTheGap-ERC/admtools",
build_vignettes = TRUE,
ref = "dev",
dependencies = TRUE)
```
After installation, you can load the package using
```R
library("admtools")
```
To get started, have a look at the available vignettes via
```R
browseVignettes(package = "admtools") # opens in Browser
#or
vignette(package = "admtools")
```
A good place to start reading is the introductory vignette, available via
```R
vignette("admtools")
```
## License
GPL-3.0, see LICENSE file for license text.
## Copyright
Copyright 2023 Netherlands eScience Center and Utrecht University
## Contribution
For contribution guidelines see the CONTRIBUTING.md file
## Citation
To cite the package, use
* Hohmann, N. (2024). admtools (v0.4.0). Zenodo. https://doi.org/10.5281/zenodo.13888709
or run
```R
citation("admtools")
```
in R. Alternatively, you can use the information in the CITATION.cff file, or generate it using the "cite this repository" button on GitHub.
## References
This package uses data from
- Hohmann, Niklas; Koelewijn, Joël R.; Burgess, Peter; Jarochowska, Emilia. 2024. "Identification of the mode of evolution in incomplete carbonate successions." BMC Ecology and Evolution, **24**, 113. [DOI: 10.1186/s12862-024-02287-2](https://doi.org/10.1186/s12862-024-02287-2).
- Hohmann, Niklas, Koelewijn, Joël R.; Burgess, Peter; Jarochowska, Emilia. 2023. "Identification of the Mode of Evolution in Incomplete Carbonate Successions - Supporting Data." Open Science Framework. , published under the [CC-BY 4.0](https://creativecommons.org/licenses/by/4.0/) license.
## Funding information
The authors acknowledge the contribution of the CycloNet project, funded by the Research Foundation Flanders (FWO, grant no. W000522N)
Funded by the European Union (ERC, MindTheGap, StG project no 101041077). Views and opinions expressed are however those of the author(s) only and do not necessarily reflect those of the European Union or the European Research Council. Neither the European Union nor the granting authority can be held responsible for them.
