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https://github.com/NCEAS/datamgmt
Data management utilities for curating, documenting, and publishing data.
https://github.com/NCEAS/datamgmt
Last synced: about 1 month ago
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Data management utilities for curating, documenting, and publishing data.
- Host: GitHub
- URL: https://github.com/NCEAS/datamgmt
- Owner: NCEAS
- License: apache-2.0
- Created: 2018-01-19T23:02:42.000Z (over 6 years ago)
- Default Branch: main
- Last Pushed: 2023-06-03T01:50:30.000Z (over 1 year ago)
- Last Synced: 2024-06-04T23:56:57.046Z (4 months ago)
- Language: R
- Homepage: https://nceas.github.io/datamgmt/
- Size: 1.74 MB
- Stars: 15
- Watchers: 18
- Forks: 13
- Open Issues: 21
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
- jimsghstars - NCEAS/datamgmt - Data management utilities for curating, documenting, and publishing data. (R)
README
# datamgmt
### *Data management utilities for curating, documenting, and publishing data*
[](https://github.com/NCEAS/datamgmt/actions)
[](https://travis-ci.org/NCEAS/datamgmt)
[](https://cran.r-project.org/package=datamgmt)
- **Authors**: NCEAS Data Science Fellows
- **License**: [Apache 2.0](https://opensource.org/licenses/Apache-2.0)
- [Package source code on GitHub](https://github.com/NCEAS/datamgmt)
- [**Submit bugs and feature requests**](https://github.com/NCEAS/datamgmt/issues)
The *datamgmt* R package supports management of data packages on the [Arctic Data Center](https://arcticdata.io/) (ADC) and [State of Alaska's Salmon and People](https://alaskasalmonandpeople.org/) (SASAP) data portals.
## Installing
You can install the development version from GitHub with:
```{r}
# install.packages("remotes")
remotes::install_github("NCEAS/datamgmt")
```
## Contributing
- Submit suggestions or bugs as [Issues](https://github.com/NCEAS/arcticdatautils/issues).
- For pull requests, target the `master` branch
- Follow the [tidyverse style conventions](http://style.tidyverse.org/), with the following specific style preferences:
- use underscore for all variable names unless referring to an EML object (e.g., otherEntity, publicationDate, etc.)
- include argument checks in the form of `stopifnot()` statements for all functions
- Before submitting a pull request, please update documentation, check package, and run tests:
- use `devtools::check()`
- fix any ERRORs and test failures to ensure the Travis CI build passes
## Errors
The `create_attributes_table()` function sometimes returns the following error:
```
Warning: Error in safeFromJSON: Argument 'txt' is not a valid JSON string.
[No stack trace available]
Error in safeFromJSON(charData, simplifyVector = FALSE) :
Argument 'txt' is not a valid JSON string.
```
It is probably because your version of `httpuv` is incompatible. Run `devtools::install_version("httpuv", "1.4.3")` and restart your R session and try running the code again. Downgrading to version `1.4.3` usually solves the issue. However, you can also try upgrading to the latest release of `httpuv`. It is also possible that this is a browser issue. Try switching your browser if this does not work.
## Acknowledgements
Work on this package was supported by:
- The Arctic Data Center: NSF-PLR grant #1546024 to M. B. Jones, S. Baker-Yeboah, J. Dozier, M. Schildhauer, and A. Budden
Additional support was provided by the National Center for Ecological Analysis and Synthesis, a Center funded by the University of California, Santa Barbara, and the State of California.
[](http://www.nceas.ucsb.edu)