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https://github.com/NNoureen/JASMINE

Single cell RNAseq Signature scoring
https://github.com/NNoureen/JASMINE

Last synced: 26 days ago
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Single cell RNAseq Signature scoring

Host: GitHub
URL: https://github.com/NNoureen/JASMINE
Owner: NNoureen
Created: 2021-06-30T18:29:38.000Z (over 3 years ago)
Default Branch: main
Last Pushed: 2022-10-24T15:30:11.000Z (about 2 years ago)
Last Synced: 2024-02-15T09:37:27.844Z (10 months ago)
Language: R
Size: 23.4 KB
Stars: 6
Watchers: 3
Forks: 2
Open Issues: 4
Metadata Files:
- Readme: README.md

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README

# JASMINE
Single cell RNAseq Signature scoring (JASMINE is an R script which could be used directly by using the functions without installation)
#### Input Data for JASMINE:-
##### 1. A single cell RNAseq data matrix, where rows correspond to gene symbols and columns correspond to cells
##### 2. A vector of marker genes(symbols) reflecting a biological process for scoring

#### Output of JASMINE :- Single Cell IDs with corresponding scores for biological process.

### Authors:- Nighat Noureen and Siyuan Zheng
### Email:- [email protected] and [email protected]

############# How to Call JASMINE Function ###########

### data = Input data
### genes = List of gene symbols for which scores have to be calculated
### method = Enter the method for computing the enrichment. Method could be either 'oddsratio' or 'likelihood'

Result = JASMINE(data,genes,method =c('oddsratio','likelihood')) ## calling JASMINE