https://github.com/Nesvilab/FragPipe

A cross-platform proteomics data analysis suite
https://github.com/Nesvilab/FragPipe

command-line-interface data-dependent-acquisition data-independent-acquisition gui isobaric-quantification label-free-quantification mass-spectrometry proteomics

Last synced: about 1 month ago
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A cross-platform proteomics data analysis suite

• Host: GitHub
• URL: https://github.com/Nesvilab/FragPipe
• Owner: Nesvilab
• License: other
• Created: 2017-05-19T18:59:53.000Z (about 8 years ago)
• Default Branch: develop
• Last Pushed: 2025-04-25T20:00:22.000Z (about 1 month ago)
• Last Synced: 2025-04-25T20:34:55.853Z (about 1 month ago)
• Topics: command-line-interface, data-dependent-acquisition, data-independent-acquisition, gui, isobaric-quantification, label-free-quantification, mass-spectrometry, proteomics
• Language: Java
• Homepage: http://fragpipe.nesvilab.org
• Size: 3.83 GB
• Stars: 226
• Watchers: 21
• Forks: 41
• Open Issues: 53
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Awesome Lists containing this project

• awesome-proteomics - Fragpipe - Java - It's a very fast search engine with a nice GUI. The software is modular, it consists of [MSfragger](https://msfragger.nesvilab.org/) the database search algorithm, [Philosopher](https://philosopher.nesvilab.org/) that analyzes the database results, as well as others for PTM and TMT integration. (3. Raw data search software/algorithms / Table of Contents)