https://github.com/Novartis/ontobrowser

OntoBrowser is a web-based application for managing ontologies
https://github.com/Novartis/ontobrowser

Last synced: 1 day ago
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OntoBrowser is a web-based application for managing ontologies

• Host: GitHub
• URL: https://github.com/Novartis/ontobrowser
• Owner: Novartis
• License: apache-2.0
• Created: 2015-03-17T03:31:02.000Z (over 9 years ago)
• Default Branch: master
• Last Pushed: 2023-02-15T10:40:14.000Z (over 1 year ago)
• Last Synced: 2024-04-16T11:10:09.724Z (5 months ago)
• Language: Java
• Homepage: http://opensource.nibr.com/projects/ontobrowser/
• Size: 659 KB
• Stars: 34
• Watchers: 34
• Forks: 9
• Open Issues: 3
• Metadata Files:
  • Readme: README.md
  • License: LICENSE.txt

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README

        
OntoBrowser

---

The OntoBrowser tool was developed to manage ontologies (and controlled terminologies e.g. [CDISC SEND](http://evs.nci.nih.gov/ftp1/CDISC/SEND/SEND%20Terminology.html)). The primary goal of the tool is to provide an online collaborative solution for expert curators to map code list terms (sourced from multiple systems/databases) to preferred ontology terms. Other key features include visualisation of ontologies in hierarchical/graph format, advanced search capabilities, peer review/approval workflow and web service access to data. 

# Key Features

* Web based collaborative ontology curation

* Interactive hierarchical/graph visualisation

* Cross ontology searching

* Synonym mapping

* Automated mapping of similar matching synonyms 

* Central database for all ontologies

* Version tracking

* Review/Approve workflow

* Email notification

* Full curator audit trail/history

# Documentation

* [Build and Deploy](doc/INSTALL.md)

* [Approval Workflow](doc/approval_workflow.pdf)

* [Web Services](doc/web_services.md)

* [Database Design](doc/database_design.pdf)

* [Security Review](doc/security_review.md)

# Publication

**OntoBrowser: a collaborative tool for curation of ontologies by subject matter experts**  

*Bioinformatics*, Volume 33, Issue 1, 1 January 2017, Pages 148–149  

  

# Acknowledgements

The OntoBrowser was initially developed in frame of the eTOX consortium. It has received support from the Innovative Medicines Initiative Joint Undertaking under grant agreement n°115002, resources of which are composed of financial contribution from the European Union's Seventh Framework Programme (FP7/2007-2013) and EFPIA companies' in kind contribution. We would like to formally acknowledge the contribution to the eTOX project of all scientists and other staff involved.

[![eTOX](img/etox-logo.png "eTOX")](http://www.etoxproject.eu) [![IMI](img/imi-logo.png "IMI")](http://www.imi.europa.eu)

# License

Copyright 2015 Novartis Institutes for Biomedical Research

Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at

    http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.