https://github.com/Novartis/pisces

PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.
https://github.com/Novartis/pisces

bioinformatics bioinformatics-pipeline rnaseq rnaseq-pipeline salmon transcriptomics

Last synced: 17 days ago
JSON representation

PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.

• Host: GitHub
• URL: https://github.com/Novartis/pisces
• Owner: Novartis
• License: apache-2.0
• Created: 2020-11-30T21:33:50.000Z (about 4 years ago)
• Default Branch: master
• Last Pushed: 2024-05-28T13:38:43.000Z (8 months ago)
• Last Synced: 2025-01-10T03:39:03.478Z (25 days ago)
• Topics: bioinformatics, bioinformatics-pipeline, rnaseq, rnaseq-pipeline, salmon, transcriptomics
• Language: Python
• Homepage:
• Size: 17.6 MB
• Stars: 29
• Watchers: 2
• Forks: 3
• Open Issues: 11
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Awesome Lists containing this project

• top-pharma50 - **Novartis/pisces** - pipeline`, `rnaseq`, `rnaseq-pipeline`, `salmon`, `transcriptomics`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 28 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 3 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Apache License 2.0 <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-05-28 13:38:43 | (Ranked by starred repositories)
• top-pharma50 - **Novartis/pisces** - pipeline`, `rnaseq`, `rnaseq-pipeline`, `salmon`, `transcriptomics`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 28 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 3 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Apache License 2.0 <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-05-28 13:38:43 | (Ranked by starred repositories)