https://github.com/Nowosad/motif

Pattern-based spatial analysis in R
https://github.com/Nowosad/motif

categorical-raster global-ecology landscape-ecology r spatial

Last synced: 3 months ago
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Pattern-based spatial analysis in R

• Host: GitHub
• URL: https://github.com/Nowosad/motif
• Owner: Nowosad
• License: other
• Created: 2019-10-01T14:33:27.000Z (about 5 years ago)
• Default Branch: main
• Last Pushed: 2024-04-14T15:46:43.000Z (7 months ago)
• Last Synced: 2024-06-11T16:07:25.727Z (5 months ago)
• Topics: categorical-raster, global-ecology, landscape-ecology, r, spatial
• Language: R
• Homepage: https://jakubnowosad.com/motif/
• Size: 55.9 MB
• Stars: 62
• Watchers: 3
• Forks: 2
• Open Issues: 12
• Metadata Files:
  • Readme: README.Rmd
  • License: LICENSE

Awesome Lists containing this project

README

        
---

output: github_document

---

```{r, include = FALSE}

knitr::opts_chunk$set(

  collapse = TRUE,

  comment = "#>",

  fig.path = "man/figures/README-",

  out.width = "100%"

)

```

# motif 

[![CRAN status](http://www.r-pkg.org/badges/version/motif)](https://cran.r-project.org/package=motif)

[![GitHub action build status](https://github.com/Nowosad/motif/workflows/pkgdown/badge.svg)](https://github.com/Nowosad/motif/actions)

[![Codecov test coverage](https://codecov.io/gh/Nowosad/motif/branch/master/graph/badge.svg)](https://app.codecov.io/gh/Nowosad/motif?branch=master)

[![CRAN RStudio mirror downloads](http://cranlogs.r-pkg.org/badges/motif)](https://cran.r-project.org/package=motif)

The **motif** package implements and extends ideas of the pattern-based spatial analysis in R.

It describes spatial patterns of categorical raster data for any defined regular and irregular areas. 

Patterns are represented quantitatively using built-in signatures based on co-occurrence matrices but also allows for any user-defined functions. 

It enables spatial analysis such as search, change detection, and clustering to be performed on spatial patterns.

## Installation

You can install the released version of motif from [CRAN](https://CRAN.R-project.org) with:

``` r

install.packages("motif")

```

And the development version from [GitHub](https://github.com/) with:

``` r

# install.packages("remotes")

remotes::install_github("Nowosad/motif")

```

## Documentation

See the package's vignettes:

1. [Introduction to the motif package](https://jakubnowosad.com/motif/articles/v1_intro.html)

2. [Types of spatial patterns' signatures](https://jakubnowosad.com/motif/articles/v2_signatures.html)

3. [Spatial patterns' search](https://jakubnowosad.com/motif/articles/v3_search.html)

4. [Spatial patterns' comparision](https://jakubnowosad.com/motif/articles/v4_compare.html)

5. [Spatial patterns' clustering](https://jakubnowosad.com/motif/articles/v5_cluster.html)

6. [Extracting the proportion of different classes in many regular local landscapes](https://jakubnowosad.com/motif/articles/v6_composition.html)

## Contribution

Contributions to this package are welcome.

The preferred method of contribution is through a GitHub pull request. 

Feel free to contact us by creating [an issue](https://github.com/Nowosad/motif/issues). 

## Citation

To cite the `motif` package in publications, please use [this paper](https://doi.org/10.1007/s10980-020-01135-0):

Nowosad, J. Motif: an open-source R tool for pattern-based spatial analysis. Landscape Ecol (2021). https://doi.org/10.1007/s10980-020-01135-0

LaTeX/BibTeX version can be obtained with:

```

library(motif)

citation("motif")

```