https://github.com/P2GX/gpsea

A Python library for discovery of genotype-phenotype associations
https://github.com/P2GX/gpsea

hpo phenopackets

Last synced: 7 months ago
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A Python library for discovery of genotype-phenotype associations

• Host: GitHub
• URL: https://github.com/P2GX/gpsea
• Owner: P2GX
• License: mit
• Created: 2022-08-31T20:21:18.000Z (almost 4 years ago)
• Default Branch: main
• Last Pushed: 2025-08-04T14:29:04.000Z (10 months ago)
• Last Synced: 2025-09-24T22:26:27.896Z (9 months ago)
• Topics: hpo, phenopackets
• Language: Python
• Homepage: https://p2gx.github.io/gpsea/stable
• Size: 30.7 MB
• Stars: 10
• Watchers: 4
• Forks: 1
• Open Issues: 13
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
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GPSEA (Genotypes and Phenotypes - Statistical Evaluation of Associations) is a Python package for finding genotype-phenotype associations.

See our documentation for the [setup](https://p2gx.github.io/gpsea/stable/setup.html) instructions,

a [tutorial](https://p2gx.github.io/gpsea/stable/tutorial.html) with an end-to-end genotype-phenotype association analysis,

and a comprehensive [user guide](https://p2gx.github.io/gpsea/stable/user-guide/index.html) with everything else.

The documentation comes in two flavors:

- [Stable documentation](https://p2gx.github.io/gpsea/stable/) (last release on `main` branch)

- [Latest documentation](https://p2gx.github.io/gpsea/latest) (bleeding edge, latest commit on `develop` branch)