Ecosyste.ms: Awesome

An open API service indexing awesome lists of open source software.

Awesome Lists | Featured Topics | Projects

https://github.com/RafaelArutjunjan/InformationGeometry.jl

Methods for computational information geometry
https://github.com/RafaelArutjunjan/InformationGeometry.jl

confidence-regions fisher-information geodesics hypothesis-testing kullback-leibler-divergence manifolds parameter-inference profile-likelihood

Last synced: 3 months ago
JSON representation

Methods for computational information geometry

Awesome Lists containing this project

README 

        
# InformationGeometry.jl



*A Julia package for differential-geometric analyses of parameter inference problems.*



| **Documentation** | **Build Status** | **DOI** |

|:-----------------:|:----------------:|:----------------:|

| [![][docs-stable-img]][docs-stable-url] [![][docs-dev-img]][docs-dev-url] | [![][appveyor-img]][appveyor-url] [![][codecov-img]][codecov-url] | [![][doi-img]][doi-url] |



In essence, the functionality provided by **InformationGeometry.jl** revolves around analyzing the parameter space associated with mathematical models, given observed data.

In particular, it employs novel methods to quantify and visualize the *exact* uncertainties in the best fit parameter configuration.

That is, the confidence regions around the best fit parameters can be constructed without resorting to any approximations of their shape (e.g. as ellipsoids by assuming linear covariance between the parameters).

Moreover, the utilized schemes are highly efficient since they do *not* require one to sample large domains of the parameter space either on a grid or stochastically in order to find said confidence regions, which constitutes a significant improvement over previously established methods.



For example, given two different parametrizations of the same linear relationship between observed *x* and *y*-data, one finds the following confidence regions:



`y(x, θ) = θ[1] * x + θ[2]` | `y(x, θ) = θ[1]^3 * x + exp(θ[1] + θ[2])`

:------|------:

 | 



In addition, this package also allows for computations of



* likelihoods,

* confidence bands,

* the Fisher metric, geodesics,

* Riemann and Ricci curvature tensors



and more. With its unique features and great performance, the toolkit of **InformationGeometry.jl** offers valuable insights into complicated modeling problems from various areas of science and engineering.

Examples detailing how to use this package can be found in the [**documentation**](https://RafaelArutjunjan.github.io/InformationGeometry.jl/dev).



## Further reading

A preprint discussing the mathematical ideas underlying the methods employed by **InformationGeometry.jl** can be found in [**2211.03421**](https://arxiv.org/abs/2211.03421).



If **InformationGeometry.jl** was helpful in your own work, please consider citing [https://doi.org/10.48550/arXiv.2211.03421](https://doi.org/10.48550/arXiv.2211.03421) and [https://doi.org/10.5281/zenodo.5530660](https://doi.org/10.5281/zenodo.5530660).



[docs-stable-img]: https://img.shields.io/badge/docs-stable-blue.svg

[docs-stable-url]: https://RafaelArutjunjan.github.io/InformationGeometry.jl/stable



[docs-dev-img]: https://img.shields.io/badge/docs-dev-blue.svg

[docs-dev-url]: https://RafaelArutjunjan.github.io/InformationGeometry.jl/dev



[appveyor-img]: https://ci.appveyor.com/api/projects/status/github/RafaelArutjunjan/InformationGeometry.jl?svg=true

[appveyor-url]: https://ci.appveyor.com/project/RafaelArutjunjan/InformationGeometry-jl



[codecov-img]: https://codecov.io/gh/RafaelArutjunjan/InformationGeometry.jl/branch/master/graph/badge.svg

[codecov-url]: https://codecov.io/gh/RafaelArutjunjan/InformationGeometry.jl



[doi-img]: https://zenodo.org/badge/291016637.svg

[doi-url]: https://zenodo.org/badge/latestdoi/291016637