https://github.com/Sage-Bionetworks/data-coordination-tools
Existing tools for data coordination being used at Sage
https://github.com/Sage-Bionetworks/data-coordination-tools
Last synced: 19 days ago
JSON representation
Existing tools for data coordination being used at Sage
- Host: GitHub
- URL: https://github.com/Sage-Bionetworks/data-coordination-tools
- Owner: Sage-Bionetworks
- Created: 2019-11-01T22:55:10.000Z (over 5 years ago)
- Default Branch: master
- Last Pushed: 2019-12-11T23:03:48.000Z (over 5 years ago)
- Last Synced: 2024-04-11T01:25:08.856Z (about 1 year ago)
- Size: 5.86 KB
- Stars: 0
- Watchers: 5
- Forks: 1
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
Awesome Lists containing this project
- awesome-synapse - Data Coordination Tools - This repository gathers existing tools used for data coordination at Sage. (Lists / Shiny)
README
# Data coordination tools
This repository gathers existing tools used for data coordination at Sage, per
the metadata working group's 2019 objectives:
> (A) Create a GitHub repository containing:
>
> - List of existing tools for data coordination converted, when applicable, to
> work with a common set of underlying schema standards (i.e. Schema.org and
> JSONSchemas) and documentation of the above tools. Tools should include at
> minimum
> - tools for metadata schema definition
> - tools for converting metadata schemas into validation schemas
> - tools for validating metadata associated with new data uploaded to Synapse,
> based on metadata schema
> - tools for validating existing metadata on Synapse
> - Gap analysis vis-a-vis existing data onboarding use-cases across Sage
>
> (S) Document describing best practices across projects (aka how we will
> support data curation going forward)
## Tools
* [HTAN-data-pipeline](https://github.com/Sage-Bionetworks/HTAN-data-pipeline)
* [HTAN_Shiny](https://github.com/Sage-Bionetworks/HTAN_Shiny)
* [dccvalidator](https://github.com/Sage-Bionetworks/dccvalidator/)
* [dccmonitor](https://github.com/sage-bionetworks/dccmonitor)
* [synapseAnnotations](https://github.com/Sage-Bionetworks/synapseAnnotations/)
* [annotator](https://github.com/Sage-Bionetworks/annotator)
* [Genie](https://github.com/Sage-Bionetworks/Genie)
* [annotationUI](https://shinypro.synapse.org/users/nsanati/annotationUI/)
* [ki Rally Manager](https://github.com/Sage-Bionetworks/ki-rally-manager)
* [syndccutils](https://github.com/Sage-Bionetworks/syndccutils)
## Gap analysis
See columns E and F of the "Top ranked use cases" sheet here: https://docs.google.com/spreadsheets/d/1UgY3JR6WlHVgHkGTzs1wUpV5E7QFuOpwC3ph1e8-zl4/edit#gid=1371550427