https://github.com/TheDecipherist/claude-code-mastery
The complete guide to Claude Code: CLAUDE.md, hooks, skills, MCP servers, and commands
https://github.com/TheDecipherist/claude-code-mastery
ai-agents anthropic claude claude-code claude-md coding-assistant developer-tools llm mcp-servers
Last synced: 10 days ago
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The complete guide to Claude Code: CLAUDE.md, hooks, skills, MCP servers, and commands
- Host: GitHub
- URL: https://github.com/TheDecipherist/claude-code-mastery
- Owner: TheDecipherist
- License: mit
- Created: 2026-01-14T18:19:47.000Z (27 days ago)
- Default Branch: main
- Last Pushed: 2026-01-14T23:21:30.000Z (26 days ago)
- Last Synced: 2026-01-14T23:28:15.239Z (26 days ago)
- Topics: ai-agents, anthropic, claude, claude-code, claude-md, coding-assistant, developer-tools, llm, mcp-servers
- Language: Shell
- Homepage: https://thedecipherist.com?utm_source=github&utm_medium=repo&utm_campaign=claude-code-mastery&utm_content=about-link
- Size: 32.2 KB
- Stars: 27
- Watchers: 0
- Forks: 3
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
- awesome-AI-driven-development - Claude Code Mastery - The complete guide to maximizing Claude Code: Global CLAUDE.md, MCP Servers, Commands, Hooks, Skills, and Why Single-Purpose Chats Matter. (Learning Resources / Copilot Extensions & Alternatives)
README
# Claude Code Mastery
The complete guide to maximizing Claude Code: Global CLAUDE.md, MCP Servers, Commands, Hooks, Skills, and Why Single-Purpose Chats Matter.
### 🌐 [Read the Guide on Our Website](https://thedecipherist.github.io/claude-code-mastery/?utm_source=github&utm_medium=readme&utm_campaign=claude-code-mastery&utm_content=hero-cta) ← Best reading experience
> **TL;DR:** Your global `~/.claude/CLAUDE.md` is a security gatekeeper AND project scaffolding blueprint. MCP servers extend Claude's capabilities. Custom commands automate workflows. **Hooks enforce rules deterministically** (where CLAUDE.md can fail). Skills package reusable expertise. And research shows mixing topics in a single chat causes **39% performance degradation**.
---
## 📚 Table of Contents
- [Quick Start](#-quick-start)
- [The Guide](#-the-guide)
- [Repository Contents](#-repository-contents)
- [Installation](#-installation)
- [Contributing](#-contributing)
- [Sources](#-sources)
---
## 🚀 Quick Start
```bash
# Clone this repo
git clone https://github.com/TheDecipherist/claude-code-mastery.git
cd claude-code-mastery
# Copy hooks to your Claude config
mkdir -p ~/.claude/hooks
cp hooks/* ~/.claude/hooks/
chmod +x ~/.claude/hooks/*.sh
# Copy the settings template (review and customize first!)
cp templates/settings.json ~/.claude/settings.json
# Copy skills
mkdir -p ~/.claude/skills
cp -r skills/* ~/.claude/skills/
```
---
## 📖 The Guide
**[📱 Read on Website](https://thedecipherist.github.io/claude-code-mastery/?utm_source=github&utm_medium=readme&utm_campaign=claude-code-mastery&utm_content=guide-section)** (recommended) | [📄 View GUIDE.md](./GUIDE.md)
### What's Covered
| Part | Topic | Key Takeaway |
|------|-------|--------------|
| 1 | Global CLAUDE.md as Security Gatekeeper | Define once, inherit everywhere |
| 2 | Project Scaffolding Rules | Every project follows same structure |
| 3 | MCP Servers | External tool integrations |
| 4 | Context7 | Live documentation access |
| 5 | Custom Commands | Workflow automation |
| 6 | Single-Purpose Chats | 39% degradation from topic mixing |
| **7** | **Skills & Hooks** | **Enforcement over suggestion** |
---
## 📁 Repository Contents
```
claude-code-mastery/
├── GUIDE.md # The complete guide
├── templates/
│ ├── global-claude.md # ~/.claude/CLAUDE.md template
│ ├── project-claude.md # ./CLAUDE.md starter
│ ├── settings.json # Hook configuration template
│ └── .gitignore # Recommended .gitignore
├── hooks/
│ ├── block-secrets.py # PreToolUse: Block .env access
│ ├── block-dangerous-commands.sh # PreToolUse: Block rm -rf, etc.
│ ├── end-of-turn.sh # Stop: Quality gates
│ ├── after-edit.sh # PostToolUse: Run formatters
│ └── notify.sh # Notification: Desktop alerts
├── skills/
│ ├── commit-messages/ # Generate conventional commits
│ │ └── SKILL.md
│ └── security-audit/ # Security vulnerability checks
│ └── SKILL.md
└── commands/
├── new-project.md # /new-project scaffold
├── security-check.md # /security-check audit
└── pre-commit.md # /pre-commit quality gates
```
---
## 🔧 Installation
### Prerequisites
- [Claude Code](https://code.claude.com) installed
- Python 3.8+ (for Python hooks)
- `jq` (for JSON parsing in shell hooks)
### Step-by-Step
#### 1. Install Hooks
```bash
# Create hooks directory
mkdir -p ~/.claude/hooks
# Copy hook scripts
cp hooks/block-secrets.py ~/.claude/hooks/
cp hooks/block-dangerous-commands.sh ~/.claude/hooks/
cp hooks/end-of-turn.sh ~/.claude/hooks/
# Make shell scripts executable
chmod +x ~/.claude/hooks/*.sh
```
#### 2. Configure Settings
```bash
# If you don't have settings.json yet
cp templates/settings.json ~/.claude/settings.json
# If you already have settings.json, merge the hooks section manually
```
#### 3. Install Skills
```bash
# Create skills directory
mkdir -p ~/.claude/skills
# Copy skills
cp -r skills/* ~/.claude/skills/
```
#### 4. Set Up Global CLAUDE.md
```bash
# Copy template
cp templates/global-claude.md ~/.claude/CLAUDE.md
# Customize with your details
$EDITOR ~/.claude/CLAUDE.md
```
#### 5. Verify Installation
```bash
# Start Claude Code
claude
# Check hooks are loaded
/hooks
# Check skills are loaded
/skills
```
---
## 🔒 Why Hooks Matter
CLAUDE.md rules are **suggestions**. Hooks are **enforcement**.
```
CLAUDE.md saying "don't edit .env"
→ Parsed by LLM
→ Weighed against other context
→ Maybe followed
PreToolUse hook blocking .env edits
→ Always runs
→ Returns exit code 2
→ Operation blocked. Period.
```
Real-world example from a community member:
> "My PreToolUse hook blocks Claude from accessing secrets (.env files) a few times per week. Claude does not respect CLAUDE.md rules very rigorously."
### Hook Exit Codes
| Code | Meaning |
|------|---------|
| 0 | Success, allow operation |
| 1 | Error (shown to user only) |
| **2** | **Block operation, feed stderr to Claude** |
---
## 🧠 Why Single-Purpose Chats
Research consistently shows topic mixing destroys accuracy:
| Study | Finding |
|-------|---------|
| [Multi-turn conversations](https://arxiv.org/pdf/2505.06120) | **39% performance drop** when mixing topics |
| [Context rot](https://research.trychroma.com/context-rot) | Recall decreases as context grows |
| [Context pollution](https://kurtiskemple.com/blog/measuring-context-pollution/) | 2% early misalignment → 40% failure rate |
**Golden Rule: One Task, One Chat**
---
## 🤝 Contributing
Contributions welcome! Please:
1. Fork the repository
2. Create a feature branch
3. Add your hooks, skills, or improvements
4. Submit a PR with description
### Ideas for Contributions
- [ ] More language-specific hooks (Go, Rust, Ruby)
- [ ] Additional skills (code review, documentation, testing)
- [ ] Framework-specific scaffolding templates
- [ ] MCP server configuration examples
---
## 📚 Sources
### Official Documentation
- [Claude Code Best Practices](https://www.anthropic.com/engineering/claude-code-best-practices) — Anthropic
- [Effective Context Engineering](https://www.anthropic.com/engineering/effective-context-engineering-for-ai-agents) — Anthropic
- [Agent Skills](https://code.claude.com/docs/en/skills) — Claude Code Docs
- [Hooks Reference](https://code.claude.com/docs/en/hooks) — Claude Code Docs
### Research
- [LLMs Get Lost In Multi-Turn Conversation](https://arxiv.org/pdf/2505.06120) — arXiv
- [Context Rot Research](https://research.trychroma.com/context-rot) — Chroma
- [Claude Loads Secrets Without Permission](https://www.knostic.ai/blog/claude-loads-secrets-without-permission) — Knostic
### Community
- [Claude Code Hooks: Guardrails That Actually Work](https://paddo.dev/blog/claude-code-hooks-guardrails/)
- [Claude Code Hooks Mastery](https://github.com/disler/claude-code-hooks-mastery)
- [Claude Code Security Best Practices](https://www.backslash.security/blog/claude-code-security-best-practices)
---
## 📄 License
MIT License - See [LICENSE](./LICENSE)
---
*Built with ❤️ by [TheDecipherist](https://thedecipherist.com?utm_source=github&utm_medium=readme&utm_campaign=claude-code-mastery&utm_content=author-link) and the Claude Code community*