https://github.com/Vitek-Lab/MSstats

R package - MSstats
https://github.com/Vitek-Lab/MSstats

Last synced: 3 months ago
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R package - MSstats

• Host: GitHub
• URL: https://github.com/Vitek-Lab/MSstats
• Owner: Vitek-Lab
• Created: 2013-10-08T14:26:44.000Z (about 11 years ago)
• Default Branch: devel
• Last Pushed: 2024-07-26T13:57:38.000Z (3 months ago)
• Last Synced: 2024-07-26T14:56:09.197Z (3 months ago)
• Language: R
• Size: 8.6 MB
• Stars: 70
• Watchers: 15
• Forks: 44
• Open Issues: 13
• Metadata Files:
  • Readme: README.md

Awesome Lists containing this project

• awesome-proteomics - MSstats - R - DDA/shotgun, bottom-up, SRM, DIA - [paper](https://academic.oup.com/bioinformatics/article/30/17/2524/2748156?login=false) (6. Stastical Analysis / Table of Contents)

README

        
MSstats

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  [![Travis build status](https://travis-ci.org/Vitek-Lab/MSstats-dev.svg?branch=master)](https://travis-ci.org/Vitek-Lab/MSstats-dev)

[![Codecov test coverage](https://codecov.io/gh/Vitek-Lab/MSstats-dev/branch/master/graph/badge.svg)](https://codecov.io/gh/Vitek-Lab/MSstats-dev?branch=master)

MSstats is an R-based/Bioconductor package for statistical relative quantification of peptides and proteins in mass spectrometry-based proteomic experiments. It is applicable to multiple types of sample preparation, including label-free workflows, workflows that use stable isotope labeled reference proteins and peptides, and work-flows that use fractionation. It is applicable to targeted Selected Reactin Monitoring(SRM), Data-Dependent Acquisiton(DDA or shotgun), and Data-Independent Acquisition(DIA or SWATH-MS). This github page is for sharing source and testing. The official webpage is msstats.org